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Tidysq integration #76

Closed
wants to merge 31 commits into from
Closed

Tidysq integration #76

wants to merge 31 commits into from

Commits on Dec 12, 2020

  1. Replace string list support with string vector support

    @slowikj
    slowikj committed Dec 12, 2020
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  2. Support tidysq sequences

    @slowikj
    slowikj committed Dec 12, 2020
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Commits on Dec 13, 2020

  1. Github workflows: add tidysq github dependency

    @slowikj
    slowikj committed Dec 13, 2020
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  2. Add tidysq tests

    @slowikj
    slowikj committed Dec 13, 2020
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  3. Fix typo in R-CMD-check.yaml

    @slowikj
    slowikj committed Dec 13, 2020
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  4. Github workflow: change quote

    @slowikj
    slowikj committed Dec 13, 2020
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  5. Install github dependencies: add Rscript -e

    @slowikj
    slowikj committed Dec 13, 2020
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  6. R-CMD-check.yaml: fix typo

    @slowikj
    slowikj committed Dec 13, 2020
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  7. Fix typo in package name

    @slowikj
    slowikj committed Dec 13, 2020
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  8. Github workflows: add CRAN repo explicitly to devtools inst.

    @slowikj
    slowikj committed Dec 13, 2020
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  9. Github workflows: add required Linux packages for devtools

    @slowikj
    slowikj committed Dec 13, 2020
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Commits on Dec 15, 2020

  1. Add rcpp::depends

    @slowikj
    slowikj committed Dec 15, 2020
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  2. Github actions: add testthat and run_covr environment variables

    @slowikj
    slowikj committed Dec 15, 2020
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  3. Github workflow: replace devtools with remotes

    @slowikj
    slowikj committed Dec 15, 2020
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  4. Move installing remotes package up

    @slowikj
    slowikj committed Dec 15, 2020
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  5. Add RScript

    @slowikj
    slowikj committed Dec 15, 2020
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  6. Try removed k-mer computation 

    in order to detect error
    @slowikj
    slowikj committed Dec 15, 2020
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  7. Temporarily remove all workflows except for windows

    @slowikj
    slowikj committed Dec 15, 2020
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Commits on Dec 17, 2020

  1. Revert "Try removed k-mer computation" 

    This reverts commit 6c9fcb3
    @slowikj
    slowikj committed Dec 17, 2020
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  2. Fix tidysq batch sequence indexing

    @slowikj
    slowikj committed Dec 17, 2020
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  3. Merge branch 'master' into feature/tidysq-integration

    @slowikj
    slowikj committed Dec 17, 2020
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  4. Update github workflow

    @slowikj
    slowikj committed Dec 17, 2020
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  5. Github workflow: fix spaces

    @slowikj
    slowikj committed Dec 17, 2020
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  6. Change workflow triggers

    @slowikj
    slowikj committed Dec 17, 2020
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  7. Add using namespace tidysq

    @slowikj
    slowikj committed Dec 17, 2020
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Commits on Dec 20, 2020

  1. Merge branch 'master' into feature/tidysq-integration

    @slowikj
    slowikj committed Dec 20, 2020
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Commits on Dec 21, 2020

  1. Fix dispatch condition for string vector

    @slowikj
    slowikj committed Dec 21, 2020
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Commits on Dec 23, 2020

  1. Change define guards to pragma directive

    @slowikj
    slowikj committed Dec 23, 2020
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  2. Remove all tidysq workflow except for importing

    @slowikj
    slowikj committed Dec 23, 2020
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  3. Remove all tidysq functions

    @slowikj
    slowikj committed Dec 23, 2020
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  4. Revert test changes

    @slowikj
    slowikj committed Dec 23, 2020
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