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Makefile
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# $Id: Makefile 1856 2017-12-06 08:36:03Z lnerger $
#######################################################
# Generic Makefile for to build PDAF library #
# To choose the architecture set $PDAF_ARCH #
# #
# Armin Corbin - University of Bonn #
#######################################################
#######################################################
# definitions for highlighting outputs
bold := $(shell tput bold)
sgr0 := $(shell tput sgr0)
#######################################################
# Include machine-specific definitions
# For available include files see directory make.arch
# To choose a file, set PDAF_ARCH either here or by an
# environment variable.
include ./make.arch/$(PDAF_ARCH).h
$(info $(bold)use machine-specific definitions in $(PDAF_ARCH).h$(sgr0))
#######################################################
OBJDIR:=build
INCDIR:=include
LIBDIR:=lib
SRCDIR:=src
EXTDIR:=external
#######################################################
# List of sources for PDAF library
#######################################################
# Modules used in PDAF
SRC_MOD_PDAF = PDAF_timer.F90 \
PDAF_memcount.F90 \
PDAF_mod_filtermpi.F90 \
PDAF_mod_filter.F90
# Module file with interface definitions
SRC_MOD_INTERFACE = PDAF_interfaces_module.F90
# Generic routines in PDAF
SRC_PDAF_GEN = PDAF_analysis_utils.F90 \
PDAF_init.F90 \
PDAF_init_si.F90 \
PDAF_init_filters.F90 \
PDAF_alloc_filters.F90 \
PDAF_print_info.F90 \
PDAF_print_version.F90 \
PDAF_communicate_ens.F90 \
PDAF_set_comm_pdaf.F90 \
PDAF_options_filters.F90 \
PDAF_get_state.F90 \
PDAF_get_state_si.F90 \
PDAF_incremental.F90 \
PDAF_incremental_si.F90 \
PDAF_set_forget.F90 \
PDAF_set_forget_local.F90 \
PDAF_add_increment.F90 \
PDAF_generate_rndmat.F90 \
PDAF_local_weights.F90 \
PDAF_local_weight.F90 \
PDAF_force_analysis.F90 \
PDAF_set_memberid.F90 \
PDAF_get_memberid.F90 \
PDAF_get_obsmemberid.F90 \
PDAF_smoother_shift.F90 \
PDAF_smoother.F90 \
PDAF_smoother_local.F90 \
PDAF_set_smootherens.F90 \
PDAF_get_smootherens.F90 \
PDAF_set_ens_pointer.F90 \
PDAF_put_state_prepost.F90 \
PDAF_put_state_prepost_si.F90 \
PDAF_assimilate_prepost.F90 \
PDAF_assimilate_prepost_si.F90 \
PDAF_prepost.F90 \
PDAF_prepost_si.F90 \
PDAF_inflate_ens.F90 \
PDAF_sampleens.F90 \
PDAF_mvnormalize.F90 \
PDAF_eofcovar.F90 \
PDAF_diag_histogram.F90 \
PDAF_diag_ensstats.F90 \
PDAF_diag_effsample.F90 \
PDAF_diag_crps.F90 \
PDAF_gather_dim_obs_f.F90 \
PDAF_gather_obs_f.F90 \
PDAF_gather_obs_f2.F90 \
PDAF_gather_obs_f_flex.F90 \
PDAF_gather_obs_f2_flex.F90 \
PDAF_allreduce.F90 \
PDAF_deallocate.F90 \
PDAF_get_assim_flag.F90 \
PDAF_get_localfilter.F90 \
PDAF_get_globalobs.F90 \
PDAF_inflate_weights.F90 \
PDAFomi_put_state_global.F90 \
PDAFomi_put_state_global_si.F90 \
PDAFomi_put_state_local.F90 \
PDAFomi_put_state_local_si.F90 \
PDAFomi_assimilate_global.F90 \
PDAFomi_assimilate_global_si.F90 \
PDAFomi_assimilate_local.F90 \
PDAFomi_assimilate_local_si.F90 \
PDAF_reset_forget.F90 \
PDAF_get_ensstats.F90 \
PDAF_set_debug_flag.F90 \
PDAF_set_offline_mode.F90
# Specific PDAF-routines for SEIK
SRC_SEIK = PDAF_seik_init.F90 \
PDAF_seik_alloc.F90 \
PDAF_seik_options.F90 \
PDAF_seik_memtime.F90 \
PDAF_put_state_seik.F90 \
PDAF_put_state_seik_si.F90 \
PDAF_assimilate_seik.F90 \
PDAF_assimilate_seik_si.F90 \
PDAF_seik_update.F90 \
PDAF_seik_analysis.F90 \
PDAF_seik_resample.F90 \
PDAF_seik_analysis_newT.F90 \
PDAF_seik_resample_newT.F90 \
PDAF_seik_analysis_trans.F90 \
PDAF_seik_matrixT.F90 \
PDAF_seik_uinv.F90 \
PDAF_seik_omega.F90 \
PDAF_seik_TtimesA.F90
# Specific PDAF-routines for local SEIK
SRC_LSEIK = PDAF_lseik_init.F90 \
PDAF_lseik_alloc.F90 \
PDAF_lseik_options.F90 \
PDAF_lseik_memtime.F90 \
PDAF_put_state_lseik.F90 \
PDAF_put_state_lseik_si.F90 \
PDAF_assimilate_lseik.F90 \
PDAF_assimilate_lseik_si.F90 \
PDAF_lseik_update.F90 \
PDAF_lseik_analysis.F90 \
PDAF_lseik_resample.F90 \
PDAF_lseik_analysis_trans.F90
# Specific PDAF-routines for SEEK
SRC_SEEK = PDAF_seek_init.F90 \
PDAF_seek_alloc.F90 \
PDAF_seek_options.F90 \
PDAF_seek_memtime.F90 \
PDAF_put_state_seek.F90 \
PDAF_put_state_seek_si.F90 \
PDAF_assimilate_seek.F90 \
PDAF_assimilate_seek_si.F90 \
PDAF_seek_update.F90 \
PDAF_seek_analysis.F90 \
PDAF_seek_rediag.F90
# Specific PDAF-routines for EnKF
SRC_ENKF = PDAF_enkf_init.F90 \
PDAF_enkf_alloc.F90 \
PDAF_enkf_options.F90 \
PDAF_enkf_memtime.F90 \
PDAF_put_state_enkf.F90 \
PDAF_put_state_enkf_si.F90 \
PDAF_assimilate_enkf.F90 \
PDAF_assimilate_enkf_si.F90 \
PDAF_enkf_update.F90 \
PDAF_enkf_obs_ensemble.F90 \
PDAF_enkf_gather_resid.F90 \
PDAF_enkf_analysis_rlm.F90 \
PDAF_enkf_analysis_rsm.F90 \
PDAF_enkf_omega.F90 \
PDAF_enkf_Tleft.F90 \
PDAF_smoother_enkf.F90
# Specific PDAF-routines for ETKF
SRC_ETKF = PDAF_etkf_init.F90 \
PDAF_etkf_alloc.F90 \
PDAF_etkf_options.F90 \
PDAF_etkf_memtime.F90 \
PDAF_put_state_etkf.F90 \
PDAF_put_state_etkf_si.F90 \
PDAF_assimilate_etkf.F90 \
PDAF_assimilate_etkf_si.F90 \
PDAF_etkf_update.F90 \
PDAF_etkf_analysis.F90 \
PDAF_etkf_analysis_T.F90 \
PDAF_etkf_analysis_fixed.F90 \
PDAF_etkf_Tright.F90 \
PDAF_etkf_Tleft.F90
# Specific PDAF-routines for LETKF
SRC_LETKF = PDAF_letkf_init.F90 \
PDAF_letkf_alloc.F90 \
PDAF_letkf_options.F90 \
PDAF_letkf_memtime.F90 \
PDAF_put_state_letkf.F90 \
PDAF_put_state_letkf_si.F90 \
PDAF_assimilate_letkf.F90 \
PDAF_assimilate_letkf_si.F90 \
PDAF_letkf_update.F90 \
PDAF_letkf_analysis.F90 \
PDAF_letkf_analysis_T.F90 \
PDAF_letkf_analysis_fixed.F90
# Specific PDAF-routines for ESTKF
SRC_ESTKF = PDAF_estkf_init.F90 \
PDAF_estkf_alloc.F90 \
PDAF_estkf_options.F90 \
PDAF_estkf_memtime.F90 \
PDAF_put_state_estkf.F90 \
PDAF_put_state_estkf_si.F90 \
PDAF_assimilate_estkf.F90 \
PDAF_assimilate_estkf_si.F90 \
PDAF_estkf_update.F90 \
PDAF_estkf_analysis.F90 \
PDAF_estkf_analysis_fixed.F90 \
PDAF_estkf_AOmega.F90 \
PDAF_estkf_OmegaA.F90
# Specific PDAF-routines for LESTKF
SRC_LESTKF = PDAF_lestkf_init.F90 \
PDAF_lestkf_alloc.F90 \
PDAF_lestkf_options.F90 \
PDAF_lestkf_memtime.F90 \
PDAF_put_state_lestkf.F90 \
PDAF_put_state_lestkf_si.F90 \
PDAF_assimilate_lestkf.F90 \
PDAF_assimilate_lestkf_si.F90 \
PDAF_lestkf_update.F90 \
PDAF_lestkf_analysis.F90 \
PDAF_lestkf_analysis_fixed.F90
# Specific PDAF-routines for LEnKF
SRC_LENKF = PDAF_lenkf_init.F90 \
PDAF_lenkf_alloc.F90 \
PDAF_lenkf_options.F90 \
PDAF_lenkf_memtime.F90 \
PDAF_put_state_lenkf.F90 \
PDAF_put_state_lenkf_si.F90 \
PDAFomi_put_state_lenkf.F90 \
PDAFomi_put_state_lenkf_si.F90 \
PDAF_assimilate_lenkf.F90 \
PDAF_assimilate_lenkf_si.F90 \
PDAFomi_assimilate_lenkf.F90 \
PDAFomi_assimilate_lenkf_si.F90 \
PDAF_lenkf_update.F90 \
PDAF_lenkf_analysis_rsm.F90
# Additional objects used by LEnKF but already specified for EnKF
# PDAF_enkf_gather_resid.F90
# PDAF_enkf_obs_ensemble.F90
# PDAF_enkf_omega.F90
# PDAF_enkf_Tleft.F90
# Specific PDAF-routines for NETF
SRC_NETF = PDAF_netf_init.F90 \
PDAF_netf_alloc.F90 \
PDAF_netf_options.F90 \
PDAF_netf_memtime.F90 \
PDAF_put_state_netf.F90 \
PDAF_put_state_netf_si.F90 \
PDAF_assimilate_netf.F90 \
PDAF_assimilate_netf_si.F90 \
PDAF_netf_update.F90 \
PDAF_netf_smootherT.F90 \
PDAF_netf_analysis.F90 \
PDAF_smoother_netf.F90
# Specific PDAF-routines for LNETF
SRC_LNETF = PDAF_lnetf_init.F90 \
PDAF_lnetf_alloc.F90 \
PDAF_lnetf_options.F90 \
PDAF_lnetf_memtime.F90 \
PDAF_put_state_lnetf.F90 \
PDAF_put_state_lnetf_si.F90 \
PDAF_assimilate_lnetf.F90 \
PDAF_assimilate_lnetf_si.F90 \
PDAF_lnetf_update.F90 \
PDAF_lnetf_analysis.F90 \
PDAF_lnetf_smootherT.F90 \
PDAF_smoother_lnetf.F90
# Specific PDAF-routines for PF
SRC_PF = PDAF_pf_init.F90 \
PDAF_pf_alloc.F90 \
PDAF_pf_options.F90 \
PDAF_pf_memtime.F90 \
PDAF_put_state_pf.F90 \
PDAF_put_state_pf_si.F90 \
PDAF_assimilate_pf.F90 \
PDAF_assimilate_pf_si.F90 \
PDAF_pf_update.F90 \
PDAF_pf_analysis.F90 \
PDAF_pf_resampling.F90 \
PDAF_pf_add_noise.F90
# Specific PDAF-routines for LKNETF
SRC_LKNETF = PDAF_lknetf_init.F90 \
PDAF_lknetf_alloc.F90 \
PDAF_lknetf_options.F90 \
PDAF_lknetf_memtime.F90 \
PDAF_put_state_lknetf.F90 \
PDAF_put_state_lknetf_si.F90 \
PDAF_assimilate_lknetf.F90 \
PDAF_assimilate_lknetf_si.F90 \
PDAF_lknetf_update.F90 \
PDAF_lknetf_analysis_T.F90 \
PDAF_lknetf_step_update.F90 \
PDAF_lknetf_ana_lnetf.F90 \
PDAF_lknetf_ana_letkfT.F90 \
PDAF_lknetf_compute_gamma.F90 \
PDAF_lknetf_set_gamma.F90 \
PDAF_lknetf_alpha_neff.F90 \
PDAF_lknetf_reset_gamma.F90
# Specific PDAF-routines for generating observations
SRC_OBSGEN = PDAF_genobs_init.F90 \
PDAF_genobs_alloc.F90 \
PDAF_genobs_options.F90 \
PDAF_put_state_generate_obs.F90 \
PDAF_put_state_generate_obs_si.F90 \
PDAFomi_put_state_generate_obs.F90 \
PDAF_generate_obs.F90 \
PDAF_generate_obs_si.F90 \
PDAFomi_generate_obs.F90 \
PDAF_gen_obs.F90
# Specific PDAF-routines for 3DVAR initialization part
SRC_3DVAR_INI = PDAF_3dvar_init.F90 \
PDAF_3dvar_alloc.F90 \
PDAF_3dvar_options.F90 \
PDAF_3dvar_memtime.F90
# Specific PDAF-routines for 3DVAR
SRC_3DVAR = PDAF_put_state_3dvar.F90 \
PDAF_assimilate_3dvar.F90 \
PDAF_3dvar_update.F90 \
PDAF_3dvar_analysis_cvt.F90 \
PDAF_3dvar_optim_lbfgs.F90 \
PDAF_3dvar_optim_cgplus.F90 \
PDAF_3dvar_costf_cvt.F90 \
PDAF_3dvar_costf_cg_cvt.F90 \
PDAF_3dvar_optim_cg.F90 \
PDAF_put_state_en3dvar_lestkf.F90 \
PDAF_assimilate_en3dvar_lestkf.F90 \
PDAF_en3dvar_update_lestkf.F90 \
PDAF_put_state_en3dvar_estkf.F90 \
PDAF_assimilate_en3dvar_estkf.F90 \
PDAF_en3dvar_update_estkf.F90 \
PDAF_en3dvar_analysis_cvt.F90 \
PDAF_en3dvar_optim_lbfgs.F90 \
PDAF_en3dvar_optim_cgplus.F90 \
PDAF_en3dvar_optim_cg.F90 \
PDAF_en3dvar_costf_cvt.F90 \
PDAF_en3dvar_costf_cg_cvt.F90 \
PDAF_put_state_hyb3dvar_lestkf.F90 \
PDAF_assimilate_hyb3dvar_lestkf.F90 \
PDAF_hyb3dvar_update_lestkf.F90 \
PDAF_hyb3dvar_analysis_cvt.F90\
PDAF_put_state_hyb3dvar_estkf.F90 \
PDAF_assimilate_hyb3dvar_estkf.F90 \
PDAF_hyb3dvar_update_estkf.F90 \
PDAF_hyb3dvar_optim_lbfgs.F90 \
PDAF_hyb3dvar_optim_cgplus.F90 \
PDAF_hyb3dvar_optim_cg.F90 \
PDAF_hyb3dvar_costf_cvt.F90 \
PDAF_hyb3dvar_costf_cg_cvt.F90 \
PDAFomi_assimilate_3dvar.F90 \
PDAFomi_assimilate_en3dvar_estkf.F90 \
PDAFomi_assimilate_en3dvar_lestkf.F90 \
PDAFomi_assimilate_hyb3dvar_estkf.F90 \
PDAFomi_assimilate_hyb3dvar_lestkf.F90 \
PDAFomi_put_state_3dvar.F90 \
PDAFomi_put_state_en3dvar_estkf.F90 \
PDAFomi_put_state_en3dvar_lestkf.F90 \
PDAFomi_put_state_hyb3dvar_estkf.F90 \
PDAFomi_put_state_hyb3dvar_lestkf.F90
# Additional file for 3DVar already specified in SRC_3DVAR_ini
# PDAF_3dvar_memtime.F90
# Routines for PDAF-OMI
SRC_PDAFOMI = PDAFomi_obs_f.F90 \
PDAFomi_obs_l.F90 \
PDAFomi_obs_op.F90 \
PDAFomi.F90 \
PDAFomi_callback.F90
# collect all PDAF sources
SRC_PDAF = $(SRC_PDAFOMI) $(SRC_PDAF_GEN) $(SRC_SEIK) $(SRC_LSEIK) $(SRC_SEEK) \
$(SRC_ENKF) $(SRC_ETKF) $(SRC_LETKF) \
$(SRC_ESTKF) $(SRC_LESTKF) $(SRC_LENKF) $(SRC_NETF) $(SRC_LNETF) \
$(SRC_LKNETF) $(SRC_PF) $(SRC_OBSGEN) $(SRC_3DVAR_INI) \
$(SRC_MOD_INTERFACE) $(SRC_MOD_PDAF)
#######################################################
# object files
#######################################################
OBJ_PDAF := $(SRC_PDAF:%.F90=$(OBJDIR)/%.o)
OBJ_PDAF_VAR = $(SRC_3DVAR:%.F90=$(OBJDIR)/%.o)
# External optimizer libraries implicitly build by make
OBJ_OPTIM = $(EXTDIR)/CG+_mpi/cgfam.o $(EXTDIR)/CG+_mpi/cgsearch.o \
$(EXTDIR)/CG+/cgfam.o $(EXTDIR)/CG+/cgsearch.o \
$(EXTDIR)/LBFGS/lbfgsb.o $(EXTDIR)/LBFGS/linpack.o \
$(EXTDIR)/LBFGS/timer.o
#######################################################
# compiler instructions
ifeq ($(FC), mpif90) # gfortran
COMPILE.f90 = $(FC) $(OPT) $(MPI_INC) $(CPP_DEFS) -c -o $@ -J $(INCDIR)
else ifeq ($(FC), mpiifort) # intel
COMPILE.f90 = $(FC) $(OPT) $(MPI_INC) $(CPP_DEFS) -c -o $@ -module $(INCDIR)
endif
#######################################################
.PHONY: all
all: directories libpdaf libpdafvar
.PHONY: libpdaf
libpdaf: $(LIBDIR)/libpdaf-d.a
.PHONY: libpdafvar
libpdafvar: $(LIBDIR)/libpdaf-var.a
#######################################################
$(LIBDIR)/libpdaf-d.a: $(OBJ_PDAF) $(OBJ_SANGOMA)
$(info $(bold)Generate Filter library$(sgr0))
$(AR) rs $(AR_SPEC) $(LIBDIR)/libpdaf-d.a $(OBJ_PDAF) $(OBJ_SANGOMA)
$(LIBDIR)/libpdaf-var.a: $(OBJ_PDAF) $(OBJ_PDAF_VAR) $(OBJ_OPTIM)
$(info $(bold)Generate Var Filter library$(sgr0))
$(AR) rs $(AR_SPEC) $(LIBDIR)/libpdaf-var.a $(OBJ_PDAF) $(OBJ_PDAF_VAR) $(OBJ_OPTIM)
# use pattern rule to create rules for all object files
$(OBJDIR)/%.o: $(SRCDIR)/%.F90
$(info $(bold)compile $<$(sgr0))
$(COMPILE.f90) $<
#######################################################
MISSINGDIRS:= $(INCDIR) $(OBJDIR) $(LIBDIR)
.PHONY: directories
directories: $(MISSINGDIRS)
$(MISSINGDIRS):
mkdir -p $@
#######################################################
.PHONY: clean
clean :
$(info $(bold)clean PDAF$(sgr0))
rm -rf $(OBJDIR)/*.o
rm -rf $(INCDIR)/*.mod
rm -rf $(LIBDIR)/libpdaf-d.a
rm -rf $(LIBDIR)/libpdaf-var.a
rm -rf $(EXTDIR)/CG+/*.o
rm -rf $(EXTDIR)/CG+_mpi/*.o
rm -rf $(EXTDIR)/LBFGS/*.o
.PHONY: veryclean
veryclean: clean
rm -r $(OBJDIR)
rm -r $(INCDIR)
rm -r $(LIBDIR)
#######################################################
.PHONY: listarch
listarch:
@echo Available architecture-specific input files for PDAF_ARCH
@echo ---------------------------------------------------------
@ls -1 ../make.arch | cut -d"." -f1
#######################################################
# include file containing dependencies for parallel
# execution of make
# created with ./mkdepends ./src ./external/* '$(OBJDIR)'
include Depends