From 594b21729470b7f6182358e359657c22fd589b06 Mon Sep 17 00:00:00 2001
From: Dries Schaumont <5946712+DriesSchaumont@users.noreply.github.com>
Date: Tue, 20 Feb 2024 15:47:31 +0100
Subject: [PATCH] OpenPipelines release 0.10.2 (#75)

Co-authored-by: github-actions <github-actions@github.com>
---
 components/modules/annotate/popv.qmd          |   6 +-
 components/modules/cluster/leiden.qmd         |   6 +-
 .../modules/compression/compress_h5mu.qmd     |   6 +-
 .../modules/convert/from_10xh5_to_h5mu.qmd    |   6 +-
 .../modules/convert/from_10xmtx_to_h5mu.qmd   |   6 +-
 .../from_bd_to_10x_molecular_barcode_tags.qmd |   6 +-
 .../modules/convert/from_bdrhap_to_h5mu.qmd   |   6 +-
 .../convert/from_cellranger_multi_to_h5mu.qmd |   6 +-
 .../modules/convert/from_h5ad_to_h5mu.qmd     |   6 +-
 .../modules/convert/from_h5mu_to_h5ad.qmd     |   6 +-
 .../modules/convert/velocyto_to_h5mu.qmd      |   6 +-
 .../cellbender_remove_background.qmd          |   6 +-
 .../cellbender_remove_background_v0_2.qmd     |   6 +-
 components/modules/dataflow/concat.qmd        |   6 +-
 components/modules/dataflow/merge.qmd         |   6 +-
 .../modules/dataflow/split_modalities.qmd     |   6 +-
 components/modules/demux/bcl2fastq.qmd        |   6 +-
 components/modules/demux/bcl_convert.qmd      |   6 +-
 .../modules/demux/cellranger_mkfastq.qmd      |   6 +-
 components/modules/dimred/pca.qmd             |   6 +-
 components/modules/dimred/umap.qmd            |   6 +-
 components/modules/download/download_file.qmd |   6 +-
 .../modules/download/sync_test_resources.qmd  |   6 +-
 components/modules/files/make_params.qmd      |   6 +-
 components/modules/filter/do_filter.qmd       |   6 +-
 .../modules/filter/filter_with_counts.qmd     |   6 +-
 components/modules/filter/filter_with_hvg.qmd |   6 +-
 .../modules/filter/filter_with_scrublet.qmd   |   6 +-
 components/modules/filter/remove_modality.qmd |   6 +-
 components/modules/filter/subset_h5mu.qmd     |   6 +-
 components/modules/integrate/harmonypy.qmd    |   6 +-
 components/modules/integrate/scanorama.qmd    |   6 +-
 components/modules/integrate/scarches.qmd     |   6 +-
 components/modules/integrate/scvi.qmd         |   6 +-
 components/modules/integrate/totalvi.qmd      |   6 +-
 components/modules/interpret/lianapy.qmd      |   6 +-
 components/modules/labels_transfer/knn.qmd    |   6 +-
 .../modules/labels_transfer/xgboost.qmd       |   6 +-
 components/modules/mapping/bd_rhapsody.qmd    |   6 +-
 .../modules/mapping/cellranger_count.qmd      |   6 +-
 .../mapping/cellranger_count_split.qmd        |   6 +-
 .../modules/mapping/cellranger_multi.qmd      |   6 +-
 components/modules/mapping/htseq_count.qmd    |   6 +-
 .../modules/mapping/htseq_count_to_h5mu.qmd   |   6 +-
 components/modules/mapping/multi_star.qmd     |   6 +-
 .../modules/mapping/multi_star_to_h5mu.qmd    |   6 +-
 components/modules/mapping/samtools_sort.qmd  |   6 +-
 components/modules/mapping/star_align.qmd     |   6 +-
 .../modules/mapping/star_align_v273a.qmd      |   6 +-
 .../modules/mapping/star_build_reference.qmd  |   6 +-
 components/modules/metadata/add_id.qmd        |   6 +-
 components/modules/metadata/join_csv.qmd      |   6 +-
 .../modules/metadata/join_uns_to_obs.qmd      |   6 +-
 .../modules/metadata/move_obsm_to_obs.qmd     |   6 +-
 components/modules/neighbors/bbknn.qmd        |   6 +-
 .../modules/neighbors/find_neighbors.qmd      |   6 +-
 .../modules/process_10xh5/filter_10xh5.qmd    |   6 +-
 .../modules/qc/calculate_qc_metrics.qmd       |   6 +-
 components/modules/qc/fastqc.qmd              |   6 +-
 components/modules/qc/multiqc.qmd             |   6 +-
 components/modules/query/cellxgene_census.qmd |   6 +-
 .../reference/build_bdrhap_reference.qmd      |   6 +-
 .../reference/build_cellranger_reference.qmd  |   6 +-
 .../modules/reference/make_reference.qmd      |   6 +-
 components/modules/report/mermaid.qmd         |   6 +-
 components/modules/transfer/publish.qmd       |   6 +-
 components/modules/transform/clr.qmd          |   6 +-
 components/modules/transform/delete_layer.qmd |   6 +-
 components/modules/transform/log1p.qmd        |   6 +-
 .../modules/transform/normalize_total.qmd     |   6 +-
 components/modules/transform/regress_out.qmd  |   6 +-
 components/modules/transform/scale.qmd        |   6 +-
 components/modules/velocity/scvelo.qmd        |   6 +-
 components/modules/velocity/velocyto.qmd      |   6 +-
 .../workflows/ingestion/bd_rhapsody.qmd       |  40 +-
 .../ingestion/cellranger_mapping.qmd          |  50 +-
 .../workflows/ingestion/cellranger_multi.qmd  |  40 +-
 .../ingestion/cellranger_postprocessing.qmd   |   6 +-
 components/workflows/ingestion/conversion.qmd |   6 +-
 components/workflows/ingestion/demux.qmd      | 102 ++--
 .../workflows/ingestion/make_reference.qmd    |   6 +-
 .../workflows/multiomics/full_pipeline.qmd    | 438 +++++++++---------
 .../multiomics/integration/bbknn_leiden.qmd   |  60 +--
 .../multiomics/integration/harmony_leiden.qmd |  70 +--
 .../integration/initialize_integration.qmd    |  54 +--
 .../integration/scanorama_leiden.qmd          |  70 +--
 .../multiomics/integration/scvi_leiden.qmd    |  70 +--
 .../multiomics/integration/totalvi_leiden.qmd | 120 ++---
 .../workflows/multiomics/multisample.qmd      | 306 ++++++------
 .../workflows/multiomics/prot_multisample.qmd |  48 +-
 .../multiomics/prot_singlesample.qmd          |  44 +-
 .../workflows/multiomics/rna_multisample.qmd  |  78 ++--
 .../workflows/multiomics/rna_singlesample.qmd |  50 +-
 93 files changed, 1051 insertions(+), 1051 deletions(-)

diff --git a/components/modules/annotate/popv.qmd b/components/modules/annotate/popv.qmd
index e4bf852d..c821af44 100644
--- a/components/modules/annotate/popv.qmd
+++ b/components/modules/annotate/popv.qmd
@@ -14,7 +14,7 @@ ID: `popv`
 Namespace: `annotate`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/annotate/popv){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/annotate/popv){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/annotate/popv/main.nf \
   --help
 ```
@@ -70,7 +70,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/annotate/popv/main.nf \
   -params-file params.yaml
diff --git a/components/modules/cluster/leiden.qmd b/components/modules/cluster/leiden.qmd
index e96a2113..120b68e4 100644
--- a/components/modules/cluster/leiden.qmd
+++ b/components/modules/cluster/leiden.qmd
@@ -14,7 +14,7 @@ ID: `leiden`
 Namespace: `cluster`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/cluster/leiden){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/cluster/leiden){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -39,7 +39,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/cluster/leiden/main.nf \
   --help
 ```
@@ -66,7 +66,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/cluster/leiden/main.nf \
   -params-file params.yaml
diff --git a/components/modules/compression/compress_h5mu.qmd b/components/modules/compression/compress_h5mu.qmd
index 3a6e8fa0..d136c164 100644
--- a/components/modules/compression/compress_h5mu.qmd
+++ b/components/modules/compression/compress_h5mu.qmd
@@ -14,7 +14,7 @@ ID: `compress_h5mu`
 Namespace: `compression`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/compression/compress_h5mu){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/compression/compress_h5mu){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -31,7 +31,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/compression/compress_h5mu/main.nf \
   --help
 ```
@@ -54,7 +54,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/compression/compress_h5mu/main.nf \
   -params-file params.yaml
diff --git a/components/modules/convert/from_10xh5_to_h5mu.qmd b/components/modules/convert/from_10xh5_to_h5mu.qmd
index d440a219..4653a23b 100644
--- a/components/modules/convert/from_10xh5_to_h5mu.qmd
+++ b/components/modules/convert/from_10xh5_to_h5mu.qmd
@@ -14,7 +14,7 @@ ID: `from_10xh5_to_h5mu`
 Namespace: `convert`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/convert/from_10xh5_to_h5mu){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/convert/from_10xh5_to_h5mu){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/convert/from_10xh5_to_h5mu/main.nf \
   --help
 ```
@@ -61,7 +61,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/convert/from_10xh5_to_h5mu/main.nf \
   -params-file params.yaml
diff --git a/components/modules/convert/from_10xmtx_to_h5mu.qmd b/components/modules/convert/from_10xmtx_to_h5mu.qmd
index 58e35735..9a317d1f 100644
--- a/components/modules/convert/from_10xmtx_to_h5mu.qmd
+++ b/components/modules/convert/from_10xmtx_to_h5mu.qmd
@@ -14,7 +14,7 @@ ID: `from_10xmtx_to_h5mu`
 Namespace: `convert`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/convert/from_10xmtx_to_h5mu){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/convert/from_10xmtx_to_h5mu){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/convert/from_10xmtx_to_h5mu/main.nf \
   --help
 ```
@@ -53,7 +53,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/convert/from_10xmtx_to_h5mu/main.nf \
   -params-file params.yaml
diff --git a/components/modules/convert/from_bd_to_10x_molecular_barcode_tags.qmd b/components/modules/convert/from_bd_to_10x_molecular_barcode_tags.qmd
index 7114f0d5..ace22266 100644
--- a/components/modules/convert/from_bd_to_10x_molecular_barcode_tags.qmd
+++ b/components/modules/convert/from_bd_to_10x_molecular_barcode_tags.qmd
@@ -14,7 +14,7 @@ ID: `from_bd_to_10x_molecular_barcode_tags`
 Namespace: `convert`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/convert/from_bd_to_10x_molecular_barcode_tags){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/convert/from_bd_to_10x_molecular_barcode_tags){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/convert/from_bd_to_10x_molecular_barcode_tags/main.nf \
   --help
 ```
@@ -54,7 +54,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/convert/from_bd_to_10x_molecular_barcode_tags/main.nf \
   -params-file params.yaml
diff --git a/components/modules/convert/from_bdrhap_to_h5mu.qmd b/components/modules/convert/from_bdrhap_to_h5mu.qmd
index 5444c7c7..4dbf2245 100644
--- a/components/modules/convert/from_bdrhap_to_h5mu.qmd
+++ b/components/modules/convert/from_bdrhap_to_h5mu.qmd
@@ -14,7 +14,7 @@ ID: `from_bdrhap_to_h5mu`
 Namespace: `convert`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/convert/from_bdrhap_to_h5mu){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/convert/from_bdrhap_to_h5mu){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/convert/from_bdrhap_to_h5mu/main.nf \
   --help
 ```
@@ -56,7 +56,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/convert/from_bdrhap_to_h5mu/main.nf \
   -params-file params.yaml
diff --git a/components/modules/convert/from_cellranger_multi_to_h5mu.qmd b/components/modules/convert/from_cellranger_multi_to_h5mu.qmd
index fe72fcb1..c0f91de4 100644
--- a/components/modules/convert/from_cellranger_multi_to_h5mu.qmd
+++ b/components/modules/convert/from_cellranger_multi_to_h5mu.qmd
@@ -14,7 +14,7 @@ ID: `from_cellranger_multi_to_h5mu`
 Namespace: `convert`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/convert/from_cellranger_multi_to_h5mu){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/convert/from_cellranger_multi_to_h5mu){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -44,7 +44,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/convert/from_cellranger_multi_to_h5mu/main.nf \
   --help
 ```
@@ -68,7 +68,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/convert/from_cellranger_multi_to_h5mu/main.nf \
   -params-file params.yaml
diff --git a/components/modules/convert/from_h5ad_to_h5mu.qmd b/components/modules/convert/from_h5ad_to_h5mu.qmd
index 018b5582..a754cfbe 100644
--- a/components/modules/convert/from_h5ad_to_h5mu.qmd
+++ b/components/modules/convert/from_h5ad_to_h5mu.qmd
@@ -14,7 +14,7 @@ ID: `from_h5ad_to_h5mu`
 Namespace: `convert`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/convert/from_h5ad_to_h5mu){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/convert/from_h5ad_to_h5mu){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/convert/from_h5ad_to_h5mu/main.nf \
   --help
 ```
@@ -54,7 +54,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/convert/from_h5ad_to_h5mu/main.nf \
   -params-file params.yaml
diff --git a/components/modules/convert/from_h5mu_to_h5ad.qmd b/components/modules/convert/from_h5mu_to_h5ad.qmd
index dcc12810..c21ccf59 100644
--- a/components/modules/convert/from_h5mu_to_h5ad.qmd
+++ b/components/modules/convert/from_h5mu_to_h5ad.qmd
@@ -14,7 +14,7 @@ ID: `from_h5mu_to_h5ad`
 Namespace: `convert`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/convert/from_h5mu_to_h5ad){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/convert/from_h5mu_to_h5ad){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/convert/from_h5mu_to_h5ad/main.nf \
   --help
 ```
@@ -54,7 +54,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/convert/from_h5mu_to_h5ad/main.nf \
   -params-file params.yaml
diff --git a/components/modules/convert/velocyto_to_h5mu.qmd b/components/modules/convert/velocyto_to_h5mu.qmd
index 81464380..5b6b2a6c 100644
--- a/components/modules/convert/velocyto_to_h5mu.qmd
+++ b/components/modules/convert/velocyto_to_h5mu.qmd
@@ -14,7 +14,7 @@ ID: `velocyto_to_h5mu`
 Namespace: `convert`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/velocity/velocyto_to_h5mu){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/velocity/velocyto_to_h5mu){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -32,7 +32,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/convert/velocyto_to_h5mu/main.nf \
   --help
 ```
@@ -62,7 +62,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/convert/velocyto_to_h5mu/main.nf \
   -params-file params.yaml
diff --git a/components/modules/correction/cellbender_remove_background.qmd b/components/modules/correction/cellbender_remove_background.qmd
index be86bbe8..88e0ed87 100644
--- a/components/modules/correction/cellbender_remove_background.qmd
+++ b/components/modules/correction/cellbender_remove_background.qmd
@@ -14,7 +14,7 @@ ID: `cellbender_remove_background`
 Namespace: `correction`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/correction/cellbender_remove_background){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/correction/cellbender_remove_background){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -35,7 +35,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/correction/cellbender_remove_background/main.nf \
   --help
 ```
@@ -101,7 +101,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/correction/cellbender_remove_background/main.nf \
   -params-file params.yaml
diff --git a/components/modules/correction/cellbender_remove_background_v0_2.qmd b/components/modules/correction/cellbender_remove_background_v0_2.qmd
index 6121d203..081bd2b0 100644
--- a/components/modules/correction/cellbender_remove_background_v0_2.qmd
+++ b/components/modules/correction/cellbender_remove_background_v0_2.qmd
@@ -14,7 +14,7 @@ ID: `cellbender_remove_background_v0_2`
 Namespace: `correction`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/correction/cellbender_remove_background_v0_2){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/correction/cellbender_remove_background_v0_2){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -35,7 +35,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/correction/cellbender_remove_background_v0_2/main.nf \
   --help
 ```
@@ -83,7 +83,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/correction/cellbender_remove_background_v0_2/main.nf \
   -params-file params.yaml
diff --git a/components/modules/dataflow/concat.qmd b/components/modules/dataflow/concat.qmd
index f2e14625..b55e0b88 100644
--- a/components/modules/dataflow/concat.qmd
+++ b/components/modules/dataflow/concat.qmd
@@ -14,7 +14,7 @@ ID: `concat`
 Namespace: `dataflow`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/dataflow/concat){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/dataflow/concat){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/dataflow/concat/main.nf \
   --help
 ```
@@ -56,7 +56,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/dataflow/concat/main.nf \
   -params-file params.yaml
diff --git a/components/modules/dataflow/merge.qmd b/components/modules/dataflow/merge.qmd
index 46429a4b..77e2ab32 100644
--- a/components/modules/dataflow/merge.qmd
+++ b/components/modules/dataflow/merge.qmd
@@ -14,7 +14,7 @@ ID: `merge`
 Namespace: `dataflow`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/dataflow/merge){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/dataflow/merge){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/dataflow/merge/main.nf \
   --help
 ```
@@ -53,7 +53,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/dataflow/merge/main.nf \
   -params-file params.yaml
diff --git a/components/modules/dataflow/split_modalities.qmd b/components/modules/dataflow/split_modalities.qmd
index cdf33427..5f84365c 100644
--- a/components/modules/dataflow/split_modalities.qmd
+++ b/components/modules/dataflow/split_modalities.qmd
@@ -14,7 +14,7 @@ ID: `split_modalities`
 Namespace: `dataflow`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/dataflow/split_modalities){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/dataflow/split_modalities){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -31,7 +31,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/dataflow/split_modalities/main.nf \
   --help
 ```
@@ -56,7 +56,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/dataflow/split_modalities/main.nf \
   -params-file params.yaml
diff --git a/components/modules/demux/bcl2fastq.qmd b/components/modules/demux/bcl2fastq.qmd
index c86a16f3..b3371b3b 100644
--- a/components/modules/demux/bcl2fastq.qmd
+++ b/components/modules/demux/bcl2fastq.qmd
@@ -14,7 +14,7 @@ ID: `bcl2fastq`
 Namespace: `demux`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/demux/bcl2fastq){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/demux/bcl2fastq){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/demux/bcl2fastq/main.nf \
   --help
 ```
@@ -55,7 +55,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/demux/bcl2fastq/main.nf \
   -params-file params.yaml
diff --git a/components/modules/demux/bcl_convert.qmd b/components/modules/demux/bcl_convert.qmd
index 578a0af6..522ba00d 100644
--- a/components/modules/demux/bcl_convert.qmd
+++ b/components/modules/demux/bcl_convert.qmd
@@ -14,7 +14,7 @@ ID: `bcl_convert`
 Namespace: `demux`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/demux/bcl_convert){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/demux/bcl_convert){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -33,7 +33,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/demux/bcl_convert/main.nf \
   --help
 ```
@@ -58,7 +58,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/demux/bcl_convert/main.nf \
   -params-file params.yaml
diff --git a/components/modules/demux/cellranger_mkfastq.qmd b/components/modules/demux/cellranger_mkfastq.qmd
index 141991cb..4a603c23 100644
--- a/components/modules/demux/cellranger_mkfastq.qmd
+++ b/components/modules/demux/cellranger_mkfastq.qmd
@@ -14,7 +14,7 @@ ID: `cellranger_mkfastq`
 Namespace: `demux`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/demux/cellranger_mkfastq){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/demux/cellranger_mkfastq){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/demux/cellranger_mkfastq/main.nf \
   --help
 ```
@@ -54,7 +54,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/demux/cellranger_mkfastq/main.nf \
   -params-file params.yaml
diff --git a/components/modules/dimred/pca.qmd b/components/modules/dimred/pca.qmd
index 39034bd3..bd10e5ae 100644
--- a/components/modules/dimred/pca.qmd
+++ b/components/modules/dimred/pca.qmd
@@ -14,7 +14,7 @@ ID: `pca`
 Namespace: `dimred`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/dimred/pca){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/dimred/pca){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/dimred/pca/main.nf \
   --help
 ```
@@ -61,7 +61,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/dimred/pca/main.nf \
   -params-file params.yaml
diff --git a/components/modules/dimred/umap.qmd b/components/modules/dimred/umap.qmd
index 957162d4..0de9bf3c 100644
--- a/components/modules/dimred/umap.qmd
+++ b/components/modules/dimred/umap.qmd
@@ -14,7 +14,7 @@ ID: `umap`
 Namespace: `dimred`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/dimred/umap){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/dimred/umap){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/dimred/umap/main.nf \
   --help
 ```
@@ -68,7 +68,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/dimred/umap/main.nf \
   -params-file params.yaml
diff --git a/components/modules/download/download_file.qmd b/components/modules/download/download_file.qmd
index aa022dcf..6fe1e348 100644
--- a/components/modules/download/download_file.qmd
+++ b/components/modules/download/download_file.qmd
@@ -14,7 +14,7 @@ ID: `download_file`
 Namespace: `download`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/download/download_file){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/download/download_file){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/download/download_file/main.nf \
   --help
 ```
@@ -53,7 +53,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/download/download_file/main.nf \
   -params-file params.yaml
diff --git a/components/modules/download/sync_test_resources.qmd b/components/modules/download/sync_test_resources.qmd
index 7fd1ee66..7adb3ae2 100644
--- a/components/modules/download/sync_test_resources.qmd
+++ b/components/modules/download/sync_test_resources.qmd
@@ -14,7 +14,7 @@ ID: `sync_test_resources`
 Namespace: `download`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/download/sync_test_resources){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/download/sync_test_resources){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/download/sync_test_resources/main.nf \
   --help
 ```
@@ -56,7 +56,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/download/sync_test_resources/main.nf \
   -params-file params.yaml
diff --git a/components/modules/files/make_params.qmd b/components/modules/files/make_params.qmd
index a0f8e45d..bab8a55f 100644
--- a/components/modules/files/make_params.qmd
+++ b/components/modules/files/make_params.qmd
@@ -14,7 +14,7 @@ ID: `make_params`
 Namespace: `files`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/files/make_params){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/files/make_params){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/files/make_params/main.nf \
   --help
 ```
@@ -58,7 +58,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/files/make_params/main.nf \
   -params-file params.yaml
diff --git a/components/modules/filter/do_filter.qmd b/components/modules/filter/do_filter.qmd
index 0097a7e8..9ba365a4 100644
--- a/components/modules/filter/do_filter.qmd
+++ b/components/modules/filter/do_filter.qmd
@@ -14,7 +14,7 @@ ID: `do_filter`
 Namespace: `filter`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/filter/do_filter){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/filter/do_filter){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/filter/do_filter/main.nf \
   --help
 ```
@@ -56,7 +56,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/filter/do_filter/main.nf \
   -params-file params.yaml
diff --git a/components/modules/filter/filter_with_counts.qmd b/components/modules/filter/filter_with_counts.qmd
index fd10cebc..7fcc51ba 100644
--- a/components/modules/filter/filter_with_counts.qmd
+++ b/components/modules/filter/filter_with_counts.qmd
@@ -14,7 +14,7 @@ ID: `filter_with_counts`
 Namespace: `filter`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/filter/filter_with_counts){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/filter/filter_with_counts){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -32,7 +32,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/filter/filter_with_counts/main.nf \
   --help
 ```
@@ -74,7 +74,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/filter/filter_with_counts/main.nf \
   -params-file params.yaml
diff --git a/components/modules/filter/filter_with_hvg.qmd b/components/modules/filter/filter_with_hvg.qmd
index 64561509..a943c188 100644
--- a/components/modules/filter/filter_with_hvg.qmd
+++ b/components/modules/filter/filter_with_hvg.qmd
@@ -14,7 +14,7 @@ ID: `filter_with_hvg`
 Namespace: `filter`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/filter/filter_with_hvg){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/filter/filter_with_hvg){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -37,7 +37,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/filter/filter_with_hvg/main.nf \
   --help
 ```
@@ -74,7 +74,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/filter/filter_with_hvg/main.nf \
   -params-file params.yaml
diff --git a/components/modules/filter/filter_with_scrublet.qmd b/components/modules/filter/filter_with_scrublet.qmd
index b36ae73b..1976b788 100644
--- a/components/modules/filter/filter_with_scrublet.qmd
+++ b/components/modules/filter/filter_with_scrublet.qmd
@@ -14,7 +14,7 @@ ID: `filter_with_scrublet`
 Namespace: `filter`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/filter/filter_with_scrublet){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/filter/filter_with_scrublet){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -49,7 +49,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/filter/filter_with_scrublet/main.nf \
   --help
 ```
@@ -82,7 +82,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/filter/filter_with_scrublet/main.nf \
   -params-file params.yaml
diff --git a/components/modules/filter/remove_modality.qmd b/components/modules/filter/remove_modality.qmd
index 6d8d843a..cc71c76b 100644
--- a/components/modules/filter/remove_modality.qmd
+++ b/components/modules/filter/remove_modality.qmd
@@ -14,7 +14,7 @@ ID: `remove_modality`
 Namespace: `filter`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/filter/remove_modality){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/filter/remove_modality){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/filter/remove_modality/main.nf \
   --help
 ```
@@ -54,7 +54,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/filter/remove_modality/main.nf \
   -params-file params.yaml
diff --git a/components/modules/filter/subset_h5mu.qmd b/components/modules/filter/subset_h5mu.qmd
index a57b80e4..86cb1771 100644
--- a/components/modules/filter/subset_h5mu.qmd
+++ b/components/modules/filter/subset_h5mu.qmd
@@ -14,7 +14,7 @@ ID: `subset_h5mu`
 Namespace: `filter`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/filter/subset_h5mu){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/filter/subset_h5mu){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/filter/subset_h5mu/main.nf \
   --help
 ```
@@ -55,7 +55,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/filter/subset_h5mu/main.nf \
   -params-file params.yaml
diff --git a/components/modules/integrate/harmonypy.qmd b/components/modules/integrate/harmonypy.qmd
index cb0afe2e..65403719 100644
--- a/components/modules/integrate/harmonypy.qmd
+++ b/components/modules/integrate/harmonypy.qmd
@@ -14,7 +14,7 @@ ID: `harmonypy`
 Namespace: `integrate`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/integrate/harmonypy){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/integrate/harmonypy){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/integrate/harmonypy/main.nf \
   --help
 ```
@@ -58,7 +58,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/integrate/harmonypy/main.nf \
   -params-file params.yaml
diff --git a/components/modules/integrate/scanorama.qmd b/components/modules/integrate/scanorama.qmd
index 572b877e..eeafb90e 100644
--- a/components/modules/integrate/scanorama.qmd
+++ b/components/modules/integrate/scanorama.qmd
@@ -14,7 +14,7 @@ ID: `scanorama`
 Namespace: `integrate`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/integrate/scanorama){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/integrate/scanorama){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/integrate/scanorama/main.nf \
   --help
 ```
@@ -62,7 +62,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/integrate/scanorama/main.nf \
   -params-file params.yaml
diff --git a/components/modules/integrate/scarches.qmd b/components/modules/integrate/scarches.qmd
index b6a86b21..2a57d7f1 100644
--- a/components/modules/integrate/scarches.qmd
+++ b/components/modules/integrate/scarches.qmd
@@ -14,7 +14,7 @@ ID: `scarches`
 Namespace: `integrate`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/integrate/scarches){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/integrate/scarches){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/integrate/scarches/main.nf \
   --help
 ```
@@ -72,7 +72,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/integrate/scarches/main.nf \
   -params-file params.yaml
diff --git a/components/modules/integrate/scvi.qmd b/components/modules/integrate/scvi.qmd
index 9fee7056..6bea4b95 100644
--- a/components/modules/integrate/scvi.qmd
+++ b/components/modules/integrate/scvi.qmd
@@ -14,7 +14,7 @@ ID: `scvi`
 Namespace: `integrate`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/integrate/scvi){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/integrate/scvi){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/integrate/scvi/main.nf \
   --help
 ```
@@ -96,7 +96,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/integrate/scvi/main.nf \
   -params-file params.yaml
diff --git a/components/modules/integrate/totalvi.qmd b/components/modules/integrate/totalvi.qmd
index 9ab4faba..75555d4d 100644
--- a/components/modules/integrate/totalvi.qmd
+++ b/components/modules/integrate/totalvi.qmd
@@ -14,7 +14,7 @@ ID: `totalvi`
 Namespace: `integrate`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/integrate/totalvi){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/integrate/totalvi){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/integrate/totalvi/main.nf \
   --help
 ```
@@ -73,7 +73,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/integrate/totalvi/main.nf \
   -params-file params.yaml
diff --git a/components/modules/interpret/lianapy.qmd b/components/modules/interpret/lianapy.qmd
index c5899600..2a08baa4 100644
--- a/components/modules/interpret/lianapy.qmd
+++ b/components/modules/interpret/lianapy.qmd
@@ -14,7 +14,7 @@ ID: `lianapy`
 Namespace: `interpret`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/interpret/lianapy){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/interpret/lianapy){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/interpret/lianapy/main.nf \
   --help
 ```
@@ -63,7 +63,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/interpret/lianapy/main.nf \
   -params-file params.yaml
diff --git a/components/modules/labels_transfer/knn.qmd b/components/modules/labels_transfer/knn.qmd
index ca464c76..347ba53f 100644
--- a/components/modules/labels_transfer/knn.qmd
+++ b/components/modules/labels_transfer/knn.qmd
@@ -14,7 +14,7 @@ ID: `knn`
 Namespace: `labels_transfer`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/labels_transfer/knn){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/labels_transfer/knn){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/labels_transfer/knn/main.nf \
   --help
 ```
@@ -51,7 +51,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/labels_transfer/knn/main.nf \
   -params-file params.yaml
diff --git a/components/modules/labels_transfer/xgboost.qmd b/components/modules/labels_transfer/xgboost.qmd
index 285a1526..3165580c 100644
--- a/components/modules/labels_transfer/xgboost.qmd
+++ b/components/modules/labels_transfer/xgboost.qmd
@@ -14,7 +14,7 @@ ID: `xgboost`
 Namespace: `labels_transfer`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/labels_transfer/xgboost){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/labels_transfer/xgboost){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/labels_transfer/xgboost/main.nf \
   --help
 ```
@@ -69,7 +69,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/labels_transfer/xgboost/main.nf \
   -params-file params.yaml
diff --git a/components/modules/mapping/bd_rhapsody.qmd b/components/modules/mapping/bd_rhapsody.qmd
index cd252f12..aed4a511 100644
--- a/components/modules/mapping/bd_rhapsody.qmd
+++ b/components/modules/mapping/bd_rhapsody.qmd
@@ -14,7 +14,7 @@ ID: `bd_rhapsody`
 Namespace: `mapping`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/mapping/bd_rhapsody){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/mapping/bd_rhapsody){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -44,7 +44,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/mapping/bd_rhapsody/main.nf \
   --help
 ```
@@ -95,7 +95,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/mapping/bd_rhapsody/main.nf \
   -params-file params.yaml
diff --git a/components/modules/mapping/cellranger_count.qmd b/components/modules/mapping/cellranger_count.qmd
index 29e3f647..e4a731fb 100644
--- a/components/modules/mapping/cellranger_count.qmd
+++ b/components/modules/mapping/cellranger_count.qmd
@@ -14,7 +14,7 @@ ID: `cellranger_count`
 Namespace: `mapping`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/mapping/cellranger_count){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/mapping/cellranger_count){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/mapping/cellranger_count/main.nf \
   --help
 ```
@@ -62,7 +62,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/mapping/cellranger_count/main.nf \
   -params-file params.yaml
diff --git a/components/modules/mapping/cellranger_count_split.qmd b/components/modules/mapping/cellranger_count_split.qmd
index 86390425..01b7356c 100644
--- a/components/modules/mapping/cellranger_count_split.qmd
+++ b/components/modules/mapping/cellranger_count_split.qmd
@@ -14,7 +14,7 @@ ID: `cellranger_count_split`
 Namespace: `mapping`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/mapping/cellranger_count_split){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/mapping/cellranger_count_split){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/mapping/cellranger_count_split/main.nf \
   --help
 ```
@@ -57,7 +57,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/mapping/cellranger_count_split/main.nf \
   -params-file params.yaml
diff --git a/components/modules/mapping/cellranger_multi.qmd b/components/modules/mapping/cellranger_multi.qmd
index 2cf57a03..d2449573 100644
--- a/components/modules/mapping/cellranger_multi.qmd
+++ b/components/modules/mapping/cellranger_multi.qmd
@@ -14,7 +14,7 @@ ID: `cellranger_multi`
 Namespace: `mapping`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/mapping/cellranger_multi){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/mapping/cellranger_multi){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/mapping/cellranger_multi/main.nf \
   --help
 ```
@@ -79,7 +79,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/mapping/cellranger_multi/main.nf \
   -params-file params.yaml
diff --git a/components/modules/mapping/htseq_count.qmd b/components/modules/mapping/htseq_count.qmd
index 0e56ecbf..2ff4c8d4 100644
--- a/components/modules/mapping/htseq_count.qmd
+++ b/components/modules/mapping/htseq_count.qmd
@@ -14,7 +14,7 @@ ID: `htseq_count`
 Namespace: `mapping`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/mapping/htseq_count){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/mapping/htseq_count){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -33,7 +33,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/mapping/htseq_count/main.nf \
   --help
 ```
@@ -75,7 +75,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/mapping/htseq_count/main.nf \
   -params-file params.yaml
diff --git a/components/modules/mapping/htseq_count_to_h5mu.qmd b/components/modules/mapping/htseq_count_to_h5mu.qmd
index b9174378..7a37c741 100644
--- a/components/modules/mapping/htseq_count_to_h5mu.qmd
+++ b/components/modules/mapping/htseq_count_to_h5mu.qmd
@@ -14,7 +14,7 @@ ID: `htseq_count_to_h5mu`
 Namespace: `mapping`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/mapping/htseq_count_to_h5mu){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/mapping/htseq_count_to_h5mu){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/mapping/htseq_count_to_h5mu/main.nf \
   --help
 ```
@@ -57,7 +57,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/mapping/htseq_count_to_h5mu/main.nf \
   -params-file params.yaml
diff --git a/components/modules/mapping/multi_star.qmd b/components/modules/mapping/multi_star.qmd
index 05976260..59f55067 100644
--- a/components/modules/mapping/multi_star.qmd
+++ b/components/modules/mapping/multi_star.qmd
@@ -14,7 +14,7 @@ ID: `multi_star`
 Namespace: `mapping`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/mapping/multi_star){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/mapping/multi_star){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/mapping/multi_star/main.nf \
   --help
 ```
@@ -61,7 +61,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/mapping/multi_star/main.nf \
   -params-file params.yaml
diff --git a/components/modules/mapping/multi_star_to_h5mu.qmd b/components/modules/mapping/multi_star_to_h5mu.qmd
index 0c64fda4..65b59e58 100644
--- a/components/modules/mapping/multi_star_to_h5mu.qmd
+++ b/components/modules/mapping/multi_star_to_h5mu.qmd
@@ -14,7 +14,7 @@ ID: `multi_star_to_h5mu`
 Namespace: `mapping`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/mapping/multi_star_to_h5mu){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/mapping/multi_star_to_h5mu){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/mapping/multi_star_to_h5mu/main.nf \
   --help
 ```
@@ -53,7 +53,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/mapping/multi_star_to_h5mu/main.nf \
   -params-file params.yaml
diff --git a/components/modules/mapping/samtools_sort.qmd b/components/modules/mapping/samtools_sort.qmd
index dd93a0bb..96cf4715 100644
--- a/components/modules/mapping/samtools_sort.qmd
+++ b/components/modules/mapping/samtools_sort.qmd
@@ -14,7 +14,7 @@ ID: `samtools_sort`
 Namespace: `mapping`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/mapping/samtools_sort){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/mapping/samtools_sort){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -36,7 +36,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/mapping/samtools_sort/main.nf \
   --help
 ```
@@ -70,7 +70,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/mapping/samtools_sort/main.nf \
   -params-file params.yaml
diff --git a/components/modules/mapping/star_align.qmd b/components/modules/mapping/star_align.qmd
index 0400ba06..bd5157a5 100644
--- a/components/modules/mapping/star_align.qmd
+++ b/components/modules/mapping/star_align.qmd
@@ -14,7 +14,7 @@ ID: `star_align`
 Namespace: `mapping`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/mapping/star_align){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/mapping/star_align){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/mapping/star_align/main.nf \
   --help
 ```
@@ -53,7 +53,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/mapping/star_align/main.nf \
   -params-file params.yaml
diff --git a/components/modules/mapping/star_align_v273a.qmd b/components/modules/mapping/star_align_v273a.qmd
index 7603268b..d8936c49 100644
--- a/components/modules/mapping/star_align_v273a.qmd
+++ b/components/modules/mapping/star_align_v273a.qmd
@@ -14,7 +14,7 @@ ID: `star_align_v273a`
 Namespace: `mapping`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/mapping/star_align_v273a){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/mapping/star_align_v273a){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/mapping/star_align_v273a/main.nf \
   --help
 ```
@@ -53,7 +53,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/mapping/star_align_v273a/main.nf \
   -params-file params.yaml
diff --git a/components/modules/mapping/star_build_reference.qmd b/components/modules/mapping/star_build_reference.qmd
index 709b0b1c..2fbb25e2 100644
--- a/components/modules/mapping/star_build_reference.qmd
+++ b/components/modules/mapping/star_build_reference.qmd
@@ -14,7 +14,7 @@ ID: `star_build_reference`
 Namespace: `mapping`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/mapping/star_build_reference){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/mapping/star_build_reference){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/mapping/star_build_reference/main.nf \
   --help
 ```
@@ -56,7 +56,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/mapping/star_build_reference/main.nf \
   -params-file params.yaml
diff --git a/components/modules/metadata/add_id.qmd b/components/modules/metadata/add_id.qmd
index 8afdafb4..afd48e65 100644
--- a/components/modules/metadata/add_id.qmd
+++ b/components/modules/metadata/add_id.qmd
@@ -14,7 +14,7 @@ ID: `add_id`
 Namespace: `metadata`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/metadata/add_id){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/metadata/add_id){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -31,7 +31,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/metadata/add_id/main.nf \
   --help
 ```
@@ -57,7 +57,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/metadata/add_id/main.nf \
   -params-file params.yaml
diff --git a/components/modules/metadata/join_csv.qmd b/components/modules/metadata/join_csv.qmd
index 63003246..9be7000f 100644
--- a/components/modules/metadata/join_csv.qmd
+++ b/components/modules/metadata/join_csv.qmd
@@ -14,7 +14,7 @@ ID: `join_csv`
 Namespace: `metadata`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/metadata/join_csv){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/metadata/join_csv){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/metadata/join_csv/main.nf \
   --help
 ```
@@ -62,7 +62,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/metadata/join_csv/main.nf \
   -params-file params.yaml
diff --git a/components/modules/metadata/join_uns_to_obs.qmd b/components/modules/metadata/join_uns_to_obs.qmd
index 168c325b..a66d4ff2 100644
--- a/components/modules/metadata/join_uns_to_obs.qmd
+++ b/components/modules/metadata/join_uns_to_obs.qmd
@@ -14,7 +14,7 @@ ID: `join_uns_to_obs`
 Namespace: `metadata`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/metadata/join_uns_to_obs){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/metadata/join_uns_to_obs){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/metadata/join_uns_to_obs/main.nf \
   --help
 ```
@@ -55,7 +55,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/metadata/join_uns_to_obs/main.nf \
   -params-file params.yaml
diff --git a/components/modules/metadata/move_obsm_to_obs.qmd b/components/modules/metadata/move_obsm_to_obs.qmd
index 46c0690a..ffa44699 100644
--- a/components/modules/metadata/move_obsm_to_obs.qmd
+++ b/components/modules/metadata/move_obsm_to_obs.qmd
@@ -14,7 +14,7 @@ ID: `move_obsm_to_obs`
 Namespace: `metadata`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/metadata/move_obsm_to_obs){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/metadata/move_obsm_to_obs){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -32,7 +32,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/metadata/move_obsm_to_obs/main.nf \
   --help
 ```
@@ -59,7 +59,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/metadata/move_obsm_to_obs/main.nf \
   -params-file params.yaml
diff --git a/components/modules/neighbors/bbknn.qmd b/components/modules/neighbors/bbknn.qmd
index efadfe5e..1637b9cc 100644
--- a/components/modules/neighbors/bbknn.qmd
+++ b/components/modules/neighbors/bbknn.qmd
@@ -14,7 +14,7 @@ ID: `bbknn`
 Namespace: `neighbors`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/neighbors/bbknn){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/neighbors/bbknn){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/neighbors/bbknn/main.nf \
   --help
 ```
@@ -62,7 +62,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/neighbors/bbknn/main.nf \
   -params-file params.yaml
diff --git a/components/modules/neighbors/find_neighbors.qmd b/components/modules/neighbors/find_neighbors.qmd
index 5253cefc..02dcb01d 100644
--- a/components/modules/neighbors/find_neighbors.qmd
+++ b/components/modules/neighbors/find_neighbors.qmd
@@ -14,7 +14,7 @@ ID: `find_neighbors`
 Namespace: `neighbors`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/neighbors/find_neighbors){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/neighbors/find_neighbors){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -31,7 +31,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/neighbors/find_neighbors/main.nf \
   --help
 ```
@@ -62,7 +62,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/neighbors/find_neighbors/main.nf \
   -params-file params.yaml
diff --git a/components/modules/process_10xh5/filter_10xh5.qmd b/components/modules/process_10xh5/filter_10xh5.qmd
index 4305fc2e..0ac47022 100644
--- a/components/modules/process_10xh5/filter_10xh5.qmd
+++ b/components/modules/process_10xh5/filter_10xh5.qmd
@@ -14,7 +14,7 @@ ID: `filter_10xh5`
 Namespace: `process_10xh5`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/process_10xh5/filter_10xh5){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/process_10xh5/filter_10xh5){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/process_10xh5/filter_10xh5/main.nf \
   --help
 ```
@@ -56,7 +56,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/process_10xh5/filter_10xh5/main.nf \
   -params-file params.yaml
diff --git a/components/modules/qc/calculate_qc_metrics.qmd b/components/modules/qc/calculate_qc_metrics.qmd
index aac8f03a..b70b42c3 100644
--- a/components/modules/qc/calculate_qc_metrics.qmd
+++ b/components/modules/qc/calculate_qc_metrics.qmd
@@ -14,7 +14,7 @@ ID: `calculate_qc_metrics`
 Namespace: `qc`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/qc/calculate_qc_metrics){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/qc/calculate_qc_metrics){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -46,7 +46,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/qc/calculate_qc_metrics/main.nf \
   --help
 ```
@@ -76,7 +76,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/qc/calculate_qc_metrics/main.nf \
   -params-file params.yaml
diff --git a/components/modules/qc/fastqc.qmd b/components/modules/qc/fastqc.qmd
index e725fe06..70c16775 100644
--- a/components/modules/qc/fastqc.qmd
+++ b/components/modules/qc/fastqc.qmd
@@ -14,7 +14,7 @@ ID: `fastqc`
 Namespace: `qc`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/qc/fastqc){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/qc/fastqc){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/qc/fastqc/main.nf \
   --help
 ```
@@ -54,7 +54,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/qc/fastqc/main.nf \
   -params-file params.yaml
diff --git a/components/modules/qc/multiqc.qmd b/components/modules/qc/multiqc.qmd
index 96d004bb..105d1984 100644
--- a/components/modules/qc/multiqc.qmd
+++ b/components/modules/qc/multiqc.qmd
@@ -14,7 +14,7 @@ ID: `multiqc`
 Namespace: `qc`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/qc/multiqc){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/qc/multiqc){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/qc/multiqc/main.nf \
   --help
 ```
@@ -52,7 +52,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/qc/multiqc/main.nf \
   -params-file params.yaml
diff --git a/components/modules/query/cellxgene_census.qmd b/components/modules/query/cellxgene_census.qmd
index 1ea1199e..3c16f88b 100644
--- a/components/modules/query/cellxgene_census.qmd
+++ b/components/modules/query/cellxgene_census.qmd
@@ -14,7 +14,7 @@ ID: `cellxgene_census`
 Namespace: `query`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/query/cellxgene_census){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/query/cellxgene_census){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/query/cellxgene_census/main.nf \
   --help
 ```
@@ -63,7 +63,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/query/cellxgene_census/main.nf \
   -params-file params.yaml
diff --git a/components/modules/reference/build_bdrhap_reference.qmd b/components/modules/reference/build_bdrhap_reference.qmd
index e6e85744..cc59b825 100644
--- a/components/modules/reference/build_bdrhap_reference.qmd
+++ b/components/modules/reference/build_bdrhap_reference.qmd
@@ -14,7 +14,7 @@ ID: `build_bdrhap_reference`
 Namespace: `reference`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/reference/build_bdrhap_reference){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/reference/build_bdrhap_reference){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/reference/build_bdrhap_reference/main.nf \
   --help
 ```
@@ -53,7 +53,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/reference/build_bdrhap_reference/main.nf \
   -params-file params.yaml
diff --git a/components/modules/reference/build_cellranger_reference.qmd b/components/modules/reference/build_cellranger_reference.qmd
index 221ecf09..6853585e 100644
--- a/components/modules/reference/build_cellranger_reference.qmd
+++ b/components/modules/reference/build_cellranger_reference.qmd
@@ -14,7 +14,7 @@ ID: `build_cellranger_reference`
 Namespace: `reference`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/reference/build_cellranger_reference){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/reference/build_cellranger_reference){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/reference/build_cellranger_reference/main.nf \
   --help
 ```
@@ -53,7 +53,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/reference/build_cellranger_reference/main.nf \
   -params-file params.yaml
diff --git a/components/modules/reference/make_reference.qmd b/components/modules/reference/make_reference.qmd
index e4d7c5b2..3a958f87 100644
--- a/components/modules/reference/make_reference.qmd
+++ b/components/modules/reference/make_reference.qmd
@@ -14,7 +14,7 @@ ID: `make_reference`
 Namespace: `reference`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/reference/make_reference){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/reference/make_reference){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -34,7 +34,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/reference/make_reference/main.nf \
   --help
 ```
@@ -60,7 +60,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/reference/make_reference/main.nf \
   -params-file params.yaml
diff --git a/components/modules/report/mermaid.qmd b/components/modules/report/mermaid.qmd
index 5be31910..6bb0d133 100644
--- a/components/modules/report/mermaid.qmd
+++ b/components/modules/report/mermaid.qmd
@@ -14,7 +14,7 @@ ID: `mermaid`
 Namespace: `report`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/report/mermaid){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/report/mermaid){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/report/mermaid/main.nf \
   --help
 ```
@@ -56,7 +56,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/report/mermaid/main.nf \
   -params-file params.yaml
diff --git a/components/modules/transfer/publish.qmd b/components/modules/transfer/publish.qmd
index 57edc502..66381ecb 100644
--- a/components/modules/transfer/publish.qmd
+++ b/components/modules/transfer/publish.qmd
@@ -14,7 +14,7 @@ ID: `publish`
 Namespace: `transfer`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/transfer/publish){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/transfer/publish){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/transfer/publish/main.nf \
   --help
 ```
@@ -52,7 +52,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/transfer/publish/main.nf \
   -params-file params.yaml
diff --git a/components/modules/transform/clr.qmd b/components/modules/transform/clr.qmd
index 0e4f68c4..2b0479e0 100644
--- a/components/modules/transform/clr.qmd
+++ b/components/modules/transform/clr.qmd
@@ -14,7 +14,7 @@ ID: `clr`
 Namespace: `transform`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/transform/clr){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/transform/clr){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/transform/clr/main.nf \
   --help
 ```
@@ -55,7 +55,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/transform/clr/main.nf \
   -params-file params.yaml
diff --git a/components/modules/transform/delete_layer.qmd b/components/modules/transform/delete_layer.qmd
index 82395cd4..3c73c91a 100644
--- a/components/modules/transform/delete_layer.qmd
+++ b/components/modules/transform/delete_layer.qmd
@@ -14,7 +14,7 @@ ID: `delete_layer`
 Namespace: `transform`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/transform/delete_layer){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/transform/delete_layer){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/transform/delete_layer/main.nf \
   --help
 ```
@@ -56,7 +56,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/transform/delete_layer/main.nf \
   -params-file params.yaml
diff --git a/components/modules/transform/log1p.qmd b/components/modules/transform/log1p.qmd
index 99bd6f78..9bcc86ad 100644
--- a/components/modules/transform/log1p.qmd
+++ b/components/modules/transform/log1p.qmd
@@ -14,7 +14,7 @@ ID: `log1p`
 Namespace: `transform`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/transform/log1p){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/transform/log1p){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/transform/log1p/main.nf \
   --help
 ```
@@ -57,7 +57,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/transform/log1p/main.nf \
   -params-file params.yaml
diff --git a/components/modules/transform/normalize_total.qmd b/components/modules/transform/normalize_total.qmd
index 3720084b..280d4c66 100644
--- a/components/modules/transform/normalize_total.qmd
+++ b/components/modules/transform/normalize_total.qmd
@@ -14,7 +14,7 @@ ID: `normalize_total`
 Namespace: `transform`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/transform/normalize_total){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/transform/normalize_total){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -33,7 +33,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/transform/normalize_total/main.nf \
   --help
 ```
@@ -61,7 +61,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/transform/normalize_total/main.nf \
   -params-file params.yaml
diff --git a/components/modules/transform/regress_out.qmd b/components/modules/transform/regress_out.qmd
index a261516d..1c622053 100644
--- a/components/modules/transform/regress_out.qmd
+++ b/components/modules/transform/regress_out.qmd
@@ -14,7 +14,7 @@ ID: `regress_out`
 Namespace: `transform`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/transform/regress_out){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/transform/regress_out){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -31,7 +31,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/transform/regress_out/main.nf \
   --help
 ```
@@ -56,7 +56,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/transform/regress_out/main.nf \
   -params-file params.yaml
diff --git a/components/modules/transform/scale.qmd b/components/modules/transform/scale.qmd
index 16845b4c..98933f59 100644
--- a/components/modules/transform/scale.qmd
+++ b/components/modules/transform/scale.qmd
@@ -14,7 +14,7 @@ ID: `scale`
 Namespace: `transform`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/transform/scaling){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/transform/scaling){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/transform/scale/main.nf \
   --help
 ```
@@ -56,7 +56,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/transform/scale/main.nf \
   -params-file params.yaml
diff --git a/components/modules/velocity/scvelo.qmd b/components/modules/velocity/scvelo.qmd
index 17bac24c..7ea7f196 100644
--- a/components/modules/velocity/scvelo.qmd
+++ b/components/modules/velocity/scvelo.qmd
@@ -14,7 +14,7 @@ ID: `scvelo`
 Namespace: `velocity`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/velocity/scvelo){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/velocity/scvelo){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/velocity/scvelo/main.nf \
   --help
 ```
@@ -69,7 +69,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/velocity/scvelo/main.nf \
   -params-file params.yaml
diff --git a/components/modules/velocity/velocyto.qmd b/components/modules/velocity/velocyto.qmd
index e28ec28d..00ce4f75 100644
--- a/components/modules/velocity/velocyto.qmd
+++ b/components/modules/velocity/velocyto.qmd
@@ -14,7 +14,7 @@ ID: `velocyto`
 Namespace: `velocity`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./src/velocity/velocyto){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./src/velocity/velocyto){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script target/nextflow/velocity/velocyto/main.nf \
   --help
 ```
@@ -56,7 +56,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script target/nextflow/velocity/velocyto/main.nf \
   -params-file params.yaml
diff --git a/components/workflows/ingestion/bd_rhapsody.qmd b/components/workflows/ingestion/bd_rhapsody.qmd
index 74f6b8ee..f809fb1e 100644
--- a/components/workflows/ingestion/bd_rhapsody.qmd
+++ b/components/workflows/ingestion/bd_rhapsody.qmd
@@ -14,7 +14,7 @@ ID: `bd_rhapsody`
 Namespace: `ingestion`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./workflows/ingestion/bd_rhapsody){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./workflows/ingestion/bd_rhapsody){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -42,7 +42,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script ./workflows/ingestion/bd_rhapsody/main.nf \
   --help
 ```
@@ -95,7 +95,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script ./workflows/ingestion/bd_rhapsody/main.nf \
   -params-file params.yaml
@@ -179,22 +179,22 @@ Replace `-profile docker` with `-profile podman` or `-profile singularity` depen
 ```{mermaid}
 %%| column: screen-inset-shaded
 flowchart LR
-    p0(Input)
-    p2(toSortedList)
-    p4(flatMap)
-    p10(bd_rhapsody)
-    p12(join)
-    p20(from_bdrhap_to_h5mu)
-    p22(join)
-    p28(Output)
-    p0-->p2
-    p2-->p4
-    p4-->p12
-    p4-->p10
-    p10-->p12
-    p12-->p22
-    p12-->p20
-    p20-->p22
-    p22-->p28
+    v0(Input)
+    v2(toSortedList)
+    v4(flatMap)
+    v10(bd_rhapsody)
+    v12(join)
+    v20(from_bdrhap_to_h5mu)
+    v22(join)
+    v28(Output)
+    v0-->v2
+    v2-->v4
+    v4-->v12
+    v4-->v10
+    v10-->v12
+    v12-->v22
+    v12-->v20
+    v20-->v22
+    v22-->v28
 
 ```
diff --git a/components/workflows/ingestion/cellranger_mapping.qmd b/components/workflows/ingestion/cellranger_mapping.qmd
index d5b524ac..0858790f 100644
--- a/components/workflows/ingestion/cellranger_mapping.qmd
+++ b/components/workflows/ingestion/cellranger_mapping.qmd
@@ -14,7 +14,7 @@ ID: `cellranger_mapping`
 Namespace: `ingestion`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./workflows/ingestion/cellranger_mapping){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./workflows/ingestion/cellranger_mapping){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script ./workflows/ingestion/cellranger_mapping/main.nf \
   --help
 ```
@@ -66,7 +66,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script ./workflows/ingestion/cellranger_mapping/main.nf \
   -params-file params.yaml
@@ -121,27 +121,27 @@ Replace `-profile docker` with `-profile podman` or `-profile singularity` depen
 ```{mermaid}
 %%| column: screen-inset-shaded
 flowchart LR
-    p0(Input)
-    p2(toSortedList)
-    p4(flatMap)
-    p11(cellranger_count)
-    p13(join)
-    p20(cellranger_count_split)
-    p22(join)
-    p30(from_10xh5_to_h5mu)
-    p32(join)
-    p39(Output)
-    p0-->p2
-    p2-->p4
-    p4-->p13
-    p4-->p11
-    p11-->p13
-    p13-->p22
-    p13-->p20
-    p20-->p22
-    p22-->p32
-    p22-->p30
-    p30-->p32
-    p32-->p39
+    v0(Input)
+    v2(toSortedList)
+    v4(flatMap)
+    v11(cellranger_count)
+    v13(join)
+    v20(cellranger_count_split)
+    v22(join)
+    v30(from_10xh5_to_h5mu)
+    v32(join)
+    v39(Output)
+    v0-->v2
+    v2-->v4
+    v4-->v13
+    v4-->v11
+    v11-->v13
+    v13-->v22
+    v13-->v20
+    v20-->v22
+    v22-->v32
+    v22-->v30
+    v30-->v32
+    v32-->v39
 
 ```
diff --git a/components/workflows/ingestion/cellranger_multi.qmd b/components/workflows/ingestion/cellranger_multi.qmd
index 61b6b7ac..09c8f2d0 100644
--- a/components/workflows/ingestion/cellranger_multi.qmd
+++ b/components/workflows/ingestion/cellranger_multi.qmd
@@ -14,7 +14,7 @@ ID: `cellranger_multi`
 Namespace: `ingestion`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./workflows/ingestion/cellranger_multi){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./workflows/ingestion/cellranger_multi){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script ./workflows/ingestion/cellranger_multi/main.nf \
   --help
 ```
@@ -79,7 +79,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script ./workflows/ingestion/cellranger_multi/main.nf \
   -params-file params.yaml
@@ -157,22 +157,22 @@ Arguments relevant to the analysis of gene expression data.
 ```{mermaid}
 %%| column: screen-inset-shaded
 flowchart LR
-    p0(Input)
-    p2(toSortedList)
-    p4(flatMap)
-    p11(cellranger_multi)
-    p13(join)
-    p20(from_cellranger_multi_to_h5mu)
-    p22(join)
-    p29(Output)
-    p0-->p2
-    p2-->p4
-    p4-->p13
-    p4-->p11
-    p11-->p13
-    p13-->p22
-    p13-->p20
-    p20-->p22
-    p22-->p29
+    v0(Input)
+    v2(toSortedList)
+    v4(flatMap)
+    v11(cellranger_multi)
+    v13(join)
+    v20(from_cellranger_multi_to_h5mu)
+    v22(join)
+    v29(Output)
+    v0-->v2
+    v2-->v4
+    v4-->v13
+    v4-->v11
+    v11-->v13
+    v13-->v22
+    v13-->v20
+    v20-->v22
+    v22-->v29
 
 ```
diff --git a/components/workflows/ingestion/cellranger_postprocessing.qmd b/components/workflows/ingestion/cellranger_postprocessing.qmd
index 7ef3eafe..6a0c47cd 100644
--- a/components/workflows/ingestion/cellranger_postprocessing.qmd
+++ b/components/workflows/ingestion/cellranger_postprocessing.qmd
@@ -14,7 +14,7 @@ ID: `cellranger_postprocessing`
 Namespace: `ingestion`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./workflows/ingestion/cellranger_postprocessing){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./workflows/ingestion/cellranger_postprocessing){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script ./workflows/ingestion/cellranger_postprocessing/main.nf \
   --help
 ```
@@ -63,7 +63,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script ./workflows/ingestion/cellranger_postprocessing/main.nf \
   -params-file params.yaml
diff --git a/components/workflows/ingestion/conversion.qmd b/components/workflows/ingestion/conversion.qmd
index db752082..aaef258b 100644
--- a/components/workflows/ingestion/conversion.qmd
+++ b/components/workflows/ingestion/conversion.qmd
@@ -14,7 +14,7 @@ ID: `conversion`
 Namespace: `ingestion`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./workflows/ingestion/conversion){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./workflows/ingestion/conversion){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script ./workflows/ingestion/conversion/main.nf \
   --help
 ```
@@ -59,7 +59,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script ./workflows/ingestion/conversion/main.nf \
   -params-file params.yaml
diff --git a/components/workflows/ingestion/demux.qmd b/components/workflows/ingestion/demux.qmd
index 8499f535..8bfe0199 100644
--- a/components/workflows/ingestion/demux.qmd
+++ b/components/workflows/ingestion/demux.qmd
@@ -14,7 +14,7 @@ ID: `demux`
 Namespace: `ingestion`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./workflows/ingestion/demux){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./workflows/ingestion/demux){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -31,7 +31,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script ./workflows/ingestion/demux/main.nf \
   --help
 ```
@@ -56,7 +56,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script ./workflows/ingestion/demux/main.nf \
   -params-file params.yaml
@@ -96,53 +96,53 @@ Replace `-profile docker` with `-profile podman` or `-profile singularity` depen
 ```{mermaid}
 %%| column: screen-inset-shaded
 flowchart LR
-    p0(Input)
-    p2(toSortedList)
-    p4(flatMap)
-    p5(filter)
-    p10(cellranger_mkfastq)
-    p12(join)
-    p35(mix)
-    p15(filter)
-    p20(bcl_convert)
-    p22(join)
-    p25(filter)
-    p30(bcl2fastq)
-    p32(join)
-    p41(fastqc)
-    p43(join)
-    p46(Output)
-    p48(toSortedList)
-    p54(multiqc)
-    p56(join)
-    p59(Output)
-    p63(Output)
-    p4-->p5
-    p4-->p15
-    p4-->p25
-    p0-->p2
-    p2-->p4
-    p5-->p12
-    p5-->p10
-    p10-->p12
-    p12-->p35
-    p15-->p22
-    p15-->p20
-    p20-->p22
-    p22-->p35
-    p25-->p32
-    p25-->p30
-    p30-->p32
-    p32-->p35
-    p35-->p43
-    p35-->p41
-    p41-->p43
-    p43-->p46
-    p35-->p48
-    p48-->p56
-    p48-->p54
-    p54-->p56
-    p56-->p59
-    p35-->p63
+    v0(Input)
+    v2(toSortedList)
+    v4(flatMap)
+    v5(filter)
+    v10(cellranger_mkfastq)
+    v12(join)
+    v35(mix)
+    v15(filter)
+    v20(bcl_convert)
+    v22(join)
+    v25(filter)
+    v30(bcl2fastq)
+    v32(join)
+    v41(fastqc)
+    v43(join)
+    v46(Output)
+    v48(toSortedList)
+    v54(multiqc)
+    v56(join)
+    v59(Output)
+    v63(Output)
+    v4-->v5
+    v4-->v15
+    v4-->v25
+    v0-->v2
+    v2-->v4
+    v5-->v12
+    v5-->v10
+    v10-->v12
+    v12-->v35
+    v15-->v22
+    v15-->v20
+    v20-->v22
+    v22-->v35
+    v25-->v32
+    v25-->v30
+    v30-->v32
+    v32-->v35
+    v35-->v43
+    v35-->v41
+    v41-->v43
+    v43-->v46
+    v35-->v48
+    v48-->v56
+    v48-->v54
+    v54-->v56
+    v56-->v59
+    v35-->v63
 
 ```
diff --git a/components/workflows/ingestion/make_reference.qmd b/components/workflows/ingestion/make_reference.qmd
index 61cb0948..47c4bb2f 100644
--- a/components/workflows/ingestion/make_reference.qmd
+++ b/components/workflows/ingestion/make_reference.qmd
@@ -14,7 +14,7 @@ ID: `make_reference`
 Namespace: `ingestion`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./workflows/ingestion/make_reference){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./workflows/ingestion/make_reference){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script ./workflows/ingestion/make_reference/main.nf \
   --help
 ```
@@ -65,7 +65,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script ./workflows/ingestion/make_reference/main.nf \
   -params-file params.yaml
diff --git a/components/workflows/multiomics/full_pipeline.qmd b/components/workflows/multiomics/full_pipeline.qmd
index 8b4d9bda..b83f7bdd 100644
--- a/components/workflows/multiomics/full_pipeline.qmd
+++ b/components/workflows/multiomics/full_pipeline.qmd
@@ -14,7 +14,7 @@ ID: `full_pipeline`
 Namespace: `multiomics`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./workflows/multiomics/full_pipeline){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./workflows/multiomics/full_pipeline){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script ./workflows/multiomics/full_pipeline/main.nf \
   --help
 ```
@@ -92,7 +92,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script ./workflows/multiomics/full_pipeline/main.nf \
   -params-file params.yaml
@@ -198,221 +198,221 @@ id present in a requirement of several components for this pipeline.
 ```{mermaid}
 %%| column: screen-inset-shaded
 flowchart LR
-    p0(Input)
-    p2(toSortedList)
-    p4(flatMap)
-    p7(toSortedList)
-    p9(Output)
-    p11(filter)
-    p17(add_id)
-    p19(join)
-    p23(mix)
-    p22(filter)
-    p25(filter)
-    p30(split_modalities)
-    p32(join)
-    p39(concat)
-    p35(filter)
-    p37(test_wf:run_wf:split_modalities_workflow:splitStub)
-    p40(flatMap)
-    p41(filter)
-    p44(toSortedList)
-    p46(flatMap)
-    p53(filter_with_counts)
-    p55(join)
-    p63(do_filter)
-    p65(join)
-    p73(filter_with_scrublet)
-    p75(join)
-    p110(concat)
-    p79(filter)
-    p82(toSortedList)
-    p84(flatMap)
-    p91(test_wf:run_wf:singlesample_processing_workflow:prot_singlesample:filter_with_counts:filter_with_counts_process1)
-    p93(join)
-    p101(test_wf:run_wf:singlesample_processing_workflow:prot_singlesample:do_filter:do_filter_process1)
-    p103(join)
-    p108(filter)
-    p112(groupTuple)
-    p118(concat)
-    p120(join)
-    p125(filter)
-    p128(toSortedList)
-    p130(flatMap)
-    p132(toSortedList)
-    p134(Output)
-    p140(normalize_total)
-    p142(join)
-    p150(log1p)
-    p152(join)
-    p160(delete_layer)
-    p162(join)
-    p170(filter_with_hvg)
-    p172(join)
-    p180(rna_calculate_qc_metrics)
-    p182(join)
-    p223(concat)
-    p188(filter)
-    p191(toSortedList)
-    p193(flatMap)
-    p195(toSortedList)
-    p197(Output)
-    p203(clr)
-    p205(join)
-    p213(prot_calculate_qc_metrics)
-    p215(join)
-    p221(filter)
-    p224(toSortedList)
-    p230(merge)
-    p232(join)
-    p235(filter)
-    p239(toSortedList)
-    p241(flatMap)
-    p248(pca)
-    p250(join)
-    p258(find_neighbors)
-    p260(join)
-    p268(umap)
-    p270(join)
-    p275(concat)
-    p274(filter)
-    p276(filter)
-    p280(toSortedList)
-    p282(flatMap)
-    p289(pca)
-    p291(join)
-    p299(find_neighbors)
-    p301(join)
-    p309(test_wf:run_wf:integration_setup_workflow:initialize_integration_prot:umap:umap_process1)
-    p311(join)
-    p316(concat)
-    p315(filter)
-    p322(publish)
-    p324(join)
-    p329(toSortedList)
-    p331(Output)
-    p22-->p23
-    p39-->p40
-    p40-->p41
-    p40-->p79
-    p40-->p108
-    p223-->p224
-    p274-->p275
-    p275-->p276
-    p275-->p315
-    p315-->p316
-    p0-->p2
-    p2-->p4
-    p4-->p7
-    p7-->p9
-    p4-->p11
-    p4-->p22
-    p11-->p19
-    p11-->p17
-    p17-->p19
-    p19-->p23
-    p23-->p25
-    p23-->p35
-    p25-->p32
-    p25-->p30
-    p30-->p32
-    p32-->p39
-    p35-->p37
-    p37-->p39
-    p41-->p44
-    p44-->p46
-    p46-->p55
-    p46-->p53
-    p53-->p55
-    p55-->p65
-    p55-->p63
-    p63-->p65
-    p65-->p75
-    p65-->p73
-    p73-->p75
-    p75-->p110
-    p79-->p82
-    p82-->p84
-    p84-->p93
-    p84-->p91
-    p91-->p93
-    p93-->p103
-    p93-->p101
-    p101-->p103
-    p103-->p110
-    p108-->p110
-    p110-->p112
-    p112-->p120
-    p112-->p118
-    p118-->p120
-    p120-->p125
-    p120-->p188
-    p120-->p221
-    p125-->p128
-    p128-->p130
-    p130-->p132
-    p132-->p134
-    p130-->p142
-    p130-->p140
-    p140-->p142
-    p142-->p152
-    p142-->p150
-    p150-->p152
-    p152-->p162
-    p152-->p160
-    p160-->p162
-    p162-->p172
-    p162-->p170
-    p170-->p172
-    p172-->p182
-    p172-->p180
-    p180-->p182
-    p182-->p223
-    p188-->p191
-    p191-->p193
-    p193-->p195
-    p195-->p197
-    p193-->p205
-    p193-->p203
-    p203-->p205
-    p205-->p215
-    p205-->p213
-    p213-->p215
-    p215-->p223
-    p221-->p223
-    p224-->p232
-    p224-->p230
-    p230-->p232
-    p232-->p235
-    p232-->p274
-    p235-->p239
-    p239-->p241
-    p241-->p250
-    p241-->p248
-    p248-->p250
-    p250-->p260
-    p250-->p258
-    p258-->p260
-    p260-->p270
-    p260-->p268
-    p268-->p270
-    p270-->p275
-    p276-->p280
-    p280-->p282
-    p282-->p291
-    p282-->p289
-    p289-->p291
-    p291-->p301
-    p291-->p299
-    p299-->p301
-    p301-->p311
-    p301-->p309
-    p309-->p311
-    p311-->p316
-    p316-->p324
-    p316-->p322
-    p322-->p324
-    p324-->p329
-    p329-->p331
+    v0(Input)
+    v2(toSortedList)
+    v4(flatMap)
+    v7(toSortedList)
+    v9(Output)
+    v11(filter)
+    v17(add_id)
+    v19(join)
+    v23(mix)
+    v22(filter)
+    v25(filter)
+    v30(split_modalities)
+    v32(join)
+    v39(concat)
+    v35(filter)
+    v37(test_wf:run_wf:split_modalities_workflow:splitStub)
+    v40(flatMap)
+    v41(filter)
+    v44(toSortedList)
+    v46(flatMap)
+    v53(filter_with_counts)
+    v55(join)
+    v63(do_filter)
+    v65(join)
+    v73(filter_with_scrublet)
+    v75(join)
+    v110(concat)
+    v79(filter)
+    v82(toSortedList)
+    v84(flatMap)
+    v91(test_wf:run_wf:singlesample_processing_workflow:prot_singlesample:filter_with_counts:filter_with_counts_process1)
+    v93(join)
+    v101(test_wf:run_wf:singlesample_processing_workflow:prot_singlesample:do_filter:do_filter_process1)
+    v103(join)
+    v108(filter)
+    v112(groupTuple)
+    v118(concat)
+    v120(join)
+    v125(filter)
+    v128(toSortedList)
+    v130(flatMap)
+    v132(toSortedList)
+    v134(Output)
+    v140(normalize_total)
+    v142(join)
+    v150(log1p)
+    v152(join)
+    v160(delete_layer)
+    v162(join)
+    v170(filter_with_hvg)
+    v172(join)
+    v180(rna_calculate_qc_metrics)
+    v182(join)
+    v223(concat)
+    v188(filter)
+    v191(toSortedList)
+    v193(flatMap)
+    v195(toSortedList)
+    v197(Output)
+    v203(clr)
+    v205(join)
+    v213(prot_calculate_qc_metrics)
+    v215(join)
+    v221(filter)
+    v224(toSortedList)
+    v230(merge)
+    v232(join)
+    v235(filter)
+    v239(toSortedList)
+    v241(flatMap)
+    v248(pca)
+    v250(join)
+    v258(find_neighbors)
+    v260(join)
+    v268(umap)
+    v270(join)
+    v275(concat)
+    v274(filter)
+    v276(filter)
+    v280(toSortedList)
+    v282(flatMap)
+    v289(pca)
+    v291(join)
+    v299(find_neighbors)
+    v301(join)
+    v309(test_wf:run_wf:integration_setup_workflow:initialize_integration_prot:umap:umap_process1)
+    v311(join)
+    v316(concat)
+    v315(filter)
+    v322(publish)
+    v324(join)
+    v329(toSortedList)
+    v331(Output)
+    v22-->v23
+    v39-->v40
+    v40-->v41
+    v40-->v79
+    v40-->v108
+    v223-->v224
+    v274-->v275
+    v275-->v276
+    v275-->v315
+    v315-->v316
+    v0-->v2
+    v2-->v4
+    v4-->v7
+    v7-->v9
+    v4-->v11
+    v4-->v22
+    v11-->v19
+    v11-->v17
+    v17-->v19
+    v19-->v23
+    v23-->v25
+    v23-->v35
+    v25-->v32
+    v25-->v30
+    v30-->v32
+    v32-->v39
+    v35-->v37
+    v37-->v39
+    v41-->v44
+    v44-->v46
+    v46-->v55
+    v46-->v53
+    v53-->v55
+    v55-->v65
+    v55-->v63
+    v63-->v65
+    v65-->v75
+    v65-->v73
+    v73-->v75
+    v75-->v110
+    v79-->v82
+    v82-->v84
+    v84-->v93
+    v84-->v91
+    v91-->v93
+    v93-->v103
+    v93-->v101
+    v101-->v103
+    v103-->v110
+    v108-->v110
+    v110-->v112
+    v112-->v120
+    v112-->v118
+    v118-->v120
+    v120-->v125
+    v120-->v188
+    v120-->v221
+    v125-->v128
+    v128-->v130
+    v130-->v132
+    v132-->v134
+    v130-->v142
+    v130-->v140
+    v140-->v142
+    v142-->v152
+    v142-->v150
+    v150-->v152
+    v152-->v162
+    v152-->v160
+    v160-->v162
+    v162-->v172
+    v162-->v170
+    v170-->v172
+    v172-->v182
+    v172-->v180
+    v180-->v182
+    v182-->v223
+    v188-->v191
+    v191-->v193
+    v193-->v195
+    v195-->v197
+    v193-->v205
+    v193-->v203
+    v203-->v205
+    v205-->v215
+    v205-->v213
+    v213-->v215
+    v215-->v223
+    v221-->v223
+    v224-->v232
+    v224-->v230
+    v230-->v232
+    v232-->v235
+    v232-->v274
+    v235-->v239
+    v239-->v241
+    v241-->v250
+    v241-->v248
+    v248-->v250
+    v250-->v260
+    v250-->v258
+    v258-->v260
+    v260-->v270
+    v260-->v268
+    v268-->v270
+    v270-->v275
+    v276-->v280
+    v280-->v282
+    v282-->v291
+    v282-->v289
+    v289-->v291
+    v291-->v301
+    v291-->v299
+    v299-->v301
+    v301-->v311
+    v301-->v309
+    v309-->v311
+    v311-->v316
+    v316-->v324
+    v316-->v322
+    v322-->v324
+    v324-->v329
+    v329-->v331
 
 ```
diff --git a/components/workflows/multiomics/integration/bbknn_leiden.qmd b/components/workflows/multiomics/integration/bbknn_leiden.qmd
index d11dedbf..66731805 100644
--- a/components/workflows/multiomics/integration/bbknn_leiden.qmd
+++ b/components/workflows/multiomics/integration/bbknn_leiden.qmd
@@ -14,7 +14,7 @@ ID: `bbknn_leiden`
 Namespace: `multiomics/integration`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./workflows/multiomics/integration/bbknn_leiden){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./workflows/multiomics/integration/bbknn_leiden){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script ./workflows/multiomics/integration/bbknn_leiden/main.nf \
   --help
 ```
@@ -74,7 +74,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script ./workflows/multiomics/integration/bbknn_leiden/main.nf \
   -params-file params.yaml
@@ -143,32 +143,32 @@ Replace `-profile docker` with `-profile podman` or `-profile singularity` depen
 ```{mermaid}
 %%| column: screen-inset-shaded
 flowchart LR
-    p0(Input)
-    p2(toSortedList)
-    p4(flatMap)
-    p10(bbknn)
-    p12(join)
-    p20(leiden)
-    p22(join)
-    p30(umap)
-    p32(join)
-    p40(move_obsm_to_obs)
-    p42(join)
-    p48(Output)
-    p0-->p2
-    p2-->p4
-    p4-->p12
-    p4-->p10
-    p10-->p12
-    p12-->p22
-    p12-->p20
-    p20-->p22
-    p22-->p32
-    p22-->p30
-    p30-->p32
-    p32-->p42
-    p32-->p40
-    p40-->p42
-    p42-->p48
+    v0(Input)
+    v2(toSortedList)
+    v4(flatMap)
+    v10(bbknn)
+    v12(join)
+    v20(leiden)
+    v22(join)
+    v30(umap)
+    v32(join)
+    v40(move_obsm_to_obs)
+    v42(join)
+    v48(Output)
+    v0-->v2
+    v2-->v4
+    v4-->v12
+    v4-->v10
+    v10-->v12
+    v12-->v22
+    v12-->v20
+    v20-->v22
+    v22-->v32
+    v22-->v30
+    v30-->v32
+    v32-->v42
+    v32-->v40
+    v40-->v42
+    v42-->v48
 
 ```
diff --git a/components/workflows/multiomics/integration/harmony_leiden.qmd b/components/workflows/multiomics/integration/harmony_leiden.qmd
index 2b6598db..230dbbaa 100644
--- a/components/workflows/multiomics/integration/harmony_leiden.qmd
+++ b/components/workflows/multiomics/integration/harmony_leiden.qmd
@@ -14,7 +14,7 @@ ID: `harmony_leiden`
 Namespace: `multiomics/integration`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./workflows/multiomics/integration/harmony_leiden){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./workflows/multiomics/integration/harmony_leiden){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script ./workflows/multiomics/integration/harmony_leiden/main.nf \
   --help
 ```
@@ -75,7 +75,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script ./workflows/multiomics/integration/harmony_leiden/main.nf \
   -params-file params.yaml
@@ -147,37 +147,37 @@ Replace `-profile docker` with `-profile podman` or `-profile singularity` depen
 ```{mermaid}
 %%| column: screen-inset-shaded
 flowchart LR
-    p0(Input)
-    p2(toSortedList)
-    p4(flatMap)
-    p10(harmonypy)
-    p12(join)
-    p20(find_neighbors)
-    p22(join)
-    p30(leiden)
-    p32(join)
-    p40(umap)
-    p42(join)
-    p50(move_obsm_to_obs)
-    p52(join)
-    p58(Output)
-    p0-->p2
-    p2-->p4
-    p4-->p12
-    p4-->p10
-    p10-->p12
-    p12-->p22
-    p12-->p20
-    p20-->p22
-    p22-->p32
-    p22-->p30
-    p30-->p32
-    p32-->p42
-    p32-->p40
-    p40-->p42
-    p42-->p52
-    p42-->p50
-    p50-->p52
-    p52-->p58
+    v0(Input)
+    v2(toSortedList)
+    v4(flatMap)
+    v10(harmonypy)
+    v12(join)
+    v20(find_neighbors)
+    v22(join)
+    v30(leiden)
+    v32(join)
+    v40(umap)
+    v42(join)
+    v50(move_obsm_to_obs)
+    v52(join)
+    v58(Output)
+    v0-->v2
+    v2-->v4
+    v4-->v12
+    v4-->v10
+    v10-->v12
+    v12-->v22
+    v12-->v20
+    v20-->v22
+    v22-->v32
+    v22-->v30
+    v30-->v32
+    v32-->v42
+    v32-->v40
+    v40-->v42
+    v42-->v52
+    v42-->v50
+    v50-->v52
+    v52-->v58
 
 ```
diff --git a/components/workflows/multiomics/integration/initialize_integration.qmd b/components/workflows/multiomics/integration/initialize_integration.qmd
index 97dc543b..9859c6f1 100644
--- a/components/workflows/multiomics/integration/initialize_integration.qmd
+++ b/components/workflows/multiomics/integration/initialize_integration.qmd
@@ -14,7 +14,7 @@ ID: `initialize_integration`
 Namespace: `multiomics/integration`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./workflows/multiomics/integration/initialize_integration){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./workflows/multiomics/integration/initialize_integration){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script ./workflows/multiomics/integration/initialize_integration/main.nf \
   --help
 ```
@@ -70,7 +70,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script ./workflows/multiomics/integration/initialize_integration/main.nf \
   -params-file params.yaml
@@ -133,29 +133,29 @@ Replace `-profile docker` with `-profile podman` or `-profile singularity` depen
 ```{mermaid}
 %%| column: screen-inset-shaded
 flowchart LR
-    p0(Input)
-    p2(toSortedList)
-    p4(flatMap)
-    p11(pca)
-    p13(join)
-    p21(find_neighbors)
-    p23(join)
-    p31(umap)
-    p33(join)
-    p38(toSortedList)
-    p40(Output)
-    p0-->p2
-    p2-->p4
-    p4-->p13
-    p4-->p11
-    p11-->p13
-    p13-->p23
-    p13-->p21
-    p21-->p23
-    p23-->p33
-    p23-->p31
-    p31-->p33
-    p33-->p38
-    p38-->p40
+    v0(Input)
+    v2(toSortedList)
+    v4(flatMap)
+    v11(pca)
+    v13(join)
+    v21(find_neighbors)
+    v23(join)
+    v31(umap)
+    v33(join)
+    v38(toSortedList)
+    v40(Output)
+    v0-->v2
+    v2-->v4
+    v4-->v13
+    v4-->v11
+    v11-->v13
+    v13-->v23
+    v13-->v21
+    v21-->v23
+    v23-->v33
+    v23-->v31
+    v31-->v33
+    v33-->v38
+    v38-->v40
 
 ```
diff --git a/components/workflows/multiomics/integration/scanorama_leiden.qmd b/components/workflows/multiomics/integration/scanorama_leiden.qmd
index 208f2d1e..e710fd5b 100644
--- a/components/workflows/multiomics/integration/scanorama_leiden.qmd
+++ b/components/workflows/multiomics/integration/scanorama_leiden.qmd
@@ -14,7 +14,7 @@ ID: `scanorama_leiden`
 Namespace: `multiomics/integration`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./workflows/multiomics/integration/scanorama_leiden){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./workflows/multiomics/integration/scanorama_leiden){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script ./workflows/multiomics/integration/scanorama_leiden/main.nf \
   --help
 ```
@@ -79,7 +79,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script ./workflows/multiomics/integration/scanorama_leiden/main.nf \
   -params-file params.yaml
@@ -157,37 +157,37 @@ Replace `-profile docker` with `-profile podman` or `-profile singularity` depen
 ```{mermaid}
 %%| column: screen-inset-shaded
 flowchart LR
-    p0(Input)
-    p2(toSortedList)
-    p4(flatMap)
-    p11(scanorama)
-    p13(join)
-    p21(find_neighbors)
-    p23(join)
-    p31(leiden)
-    p33(join)
-    p41(umap)
-    p43(join)
-    p51(move_obsm_to_obs)
-    p53(join)
-    p60(Output)
-    p0-->p2
-    p2-->p4
-    p4-->p13
-    p4-->p11
-    p11-->p13
-    p13-->p23
-    p13-->p21
-    p21-->p23
-    p23-->p33
-    p23-->p31
-    p31-->p33
-    p33-->p43
-    p33-->p41
-    p41-->p43
-    p43-->p53
-    p43-->p51
-    p51-->p53
-    p53-->p60
+    v0(Input)
+    v2(toSortedList)
+    v4(flatMap)
+    v11(scanorama)
+    v13(join)
+    v21(find_neighbors)
+    v23(join)
+    v31(leiden)
+    v33(join)
+    v41(umap)
+    v43(join)
+    v51(move_obsm_to_obs)
+    v53(join)
+    v60(Output)
+    v0-->v2
+    v2-->v4
+    v4-->v13
+    v4-->v11
+    v11-->v13
+    v13-->v23
+    v13-->v21
+    v21-->v23
+    v23-->v33
+    v23-->v31
+    v31-->v33
+    v33-->v43
+    v33-->v41
+    v41-->v43
+    v43-->v53
+    v43-->v51
+    v51-->v53
+    v53-->v60
 
 ```
diff --git a/components/workflows/multiomics/integration/scvi_leiden.qmd b/components/workflows/multiomics/integration/scvi_leiden.qmd
index 560748bf..02b6f052 100644
--- a/components/workflows/multiomics/integration/scvi_leiden.qmd
+++ b/components/workflows/multiomics/integration/scvi_leiden.qmd
@@ -14,7 +14,7 @@ ID: `scvi_leiden`
 Namespace: `multiomics/integration`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./workflows/multiomics/integration/scvi_leiden){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./workflows/multiomics/integration/scvi_leiden){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script ./workflows/multiomics/integration/scvi_leiden/main.nf \
   --help
 ```
@@ -83,7 +83,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script ./workflows/multiomics/integration/scvi_leiden/main.nf \
   -params-file params.yaml
@@ -163,37 +163,37 @@ Replace `-profile docker` with `-profile podman` or `-profile singularity` depen
 ```{mermaid}
 %%| column: screen-inset-shaded
 flowchart LR
-    p0(Input)
-    p3(toSortedList)
-    p5(flatMap)
-    p12(scvi)
-    p14(join)
-    p23(find_neighbors)
-    p25(join)
-    p33(leiden)
-    p35(join)
-    p43(umap)
-    p45(join)
-    p53(move_obsm_to_obs)
-    p55(join)
-    p62(Output)
-    p0-->p3
-    p3-->p5
-    p5-->p14
-    p5-->p12
-    p12-->p14
-    p14-->p25
-    p14-->p23
-    p23-->p25
-    p25-->p35
-    p25-->p33
-    p33-->p35
-    p35-->p45
-    p35-->p43
-    p43-->p45
-    p45-->p55
-    p45-->p53
-    p53-->p55
-    p55-->p62
+    v0(Input)
+    v3(toSortedList)
+    v5(flatMap)
+    v12(scvi)
+    v14(join)
+    v23(find_neighbors)
+    v25(join)
+    v33(leiden)
+    v35(join)
+    v43(umap)
+    v45(join)
+    v53(move_obsm_to_obs)
+    v55(join)
+    v62(Output)
+    v0-->v3
+    v3-->v5
+    v5-->v14
+    v5-->v12
+    v12-->v14
+    v14-->v25
+    v14-->v23
+    v23-->v25
+    v25-->v35
+    v25-->v33
+    v33-->v35
+    v35-->v45
+    v35-->v43
+    v43-->v45
+    v45-->v55
+    v45-->v53
+    v53-->v55
+    v55-->v62
 
 ```
diff --git a/components/workflows/multiomics/integration/totalvi_leiden.qmd b/components/workflows/multiomics/integration/totalvi_leiden.qmd
index 24400112..03386705 100644
--- a/components/workflows/multiomics/integration/totalvi_leiden.qmd
+++ b/components/workflows/multiomics/integration/totalvi_leiden.qmd
@@ -14,7 +14,7 @@ ID: `totalvi_leiden`
 Namespace: `multiomics/integration`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./workflows/multiomics/integration/totalvi_leiden){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./workflows/multiomics/integration/totalvi_leiden){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script ./workflows/multiomics/integration/totalvi_leiden/main.nf \
   --help
 ```
@@ -98,7 +98,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script ./workflows/multiomics/integration/totalvi_leiden/main.nf \
   -params-file params.yaml
@@ -209,62 +209,62 @@ Replace `-profile docker` with `-profile podman` or `-profile singularity` depen
 ```{mermaid}
 %%| column: screen-inset-shaded
 flowchart LR
-    p0(Input)
-    p3(toSortedList)
-    p5(flatMap)
-    p12(totalvi)
-    p14(join)
-    p23(find_neighbors)
-    p25(join)
-    p33(leiden)
-    p35(join)
-    p43(umap)
-    p45(join)
-    p53(move_obsm_to_obs)
-    p55(join)
-    p64(test_wf:run_wf:test_wf:run_wf:neighbors_leiden_umap:find_neighbors:find_neighbors_process1)
-    p66(join)
-    p74(test_wf:run_wf:test_wf:run_wf:neighbors_leiden_umap:leiden:leiden_process1)
-    p76(join)
-    p84(test_wf:run_wf:test_wf:run_wf:neighbors_leiden_umap:umap:umap_process1)
-    p86(join)
-    p94(test_wf:run_wf:test_wf:run_wf:neighbors_leiden_umap:move_obsm_to_obs:move_obsm_to_obs_process1)
-    p96(join)
-    p104(publish)
-    p106(join)
-    p112(Output)
-    p0-->p3
-    p3-->p5
-    p5-->p14
-    p5-->p12
-    p12-->p14
-    p14-->p25
-    p14-->p23
-    p23-->p25
-    p25-->p35
-    p25-->p33
-    p33-->p35
-    p35-->p45
-    p35-->p43
-    p43-->p45
-    p45-->p55
-    p45-->p53
-    p53-->p55
-    p55-->p66
-    p55-->p64
-    p64-->p66
-    p66-->p76
-    p66-->p74
-    p74-->p76
-    p76-->p86
-    p76-->p84
-    p84-->p86
-    p86-->p96
-    p86-->p94
-    p94-->p96
-    p96-->p106
-    p96-->p104
-    p104-->p106
-    p106-->p112
+    v0(Input)
+    v3(toSortedList)
+    v5(flatMap)
+    v12(totalvi)
+    v14(join)
+    v23(find_neighbors)
+    v25(join)
+    v33(leiden)
+    v35(join)
+    v43(umap)
+    v45(join)
+    v53(move_obsm_to_obs)
+    v55(join)
+    v64(test_wf:run_wf:test_wf:run_wf:neighbors_leiden_umap:find_neighbors:find_neighbors_process1)
+    v66(join)
+    v74(test_wf:run_wf:test_wf:run_wf:neighbors_leiden_umap:leiden:leiden_process1)
+    v76(join)
+    v84(test_wf:run_wf:test_wf:run_wf:neighbors_leiden_umap:umap:umap_process1)
+    v86(join)
+    v94(test_wf:run_wf:test_wf:run_wf:neighbors_leiden_umap:move_obsm_to_obs:move_obsm_to_obs_process1)
+    v96(join)
+    v104(publish)
+    v106(join)
+    v112(Output)
+    v0-->v3
+    v3-->v5
+    v5-->v14
+    v5-->v12
+    v12-->v14
+    v14-->v25
+    v14-->v23
+    v23-->v25
+    v25-->v35
+    v25-->v33
+    v33-->v35
+    v35-->v45
+    v35-->v43
+    v43-->v45
+    v45-->v55
+    v45-->v53
+    v53-->v55
+    v55-->v66
+    v55-->v64
+    v64-->v66
+    v66-->v76
+    v66-->v74
+    v74-->v76
+    v76-->v86
+    v76-->v84
+    v84-->v86
+    v86-->v96
+    v86-->v94
+    v94-->v96
+    v96-->v106
+    v96-->v104
+    v104-->v106
+    v106-->v112
 
 ```
diff --git a/components/workflows/multiomics/multisample.qmd b/components/workflows/multiomics/multisample.qmd
index 17f3698f..ddf4dd45 100644
--- a/components/workflows/multiomics/multisample.qmd
+++ b/components/workflows/multiomics/multisample.qmd
@@ -14,7 +14,7 @@ ID: `multisample`
 Namespace: `multiomics`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./workflows/multiomics/multisample){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./workflows/multiomics/multisample){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -34,7 +34,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script ./workflows/multiomics/multisample/main.nf \
   --help
 ```
@@ -70,7 +70,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script ./workflows/multiomics/multisample/main.nf \
   -params-file params.yaml
@@ -129,155 +129,155 @@ Replace `-profile docker` with `-profile podman` or `-profile singularity` depen
 ```{mermaid}
 %%| column: screen-inset-shaded
 flowchart LR
-    p0(Input)
-    p2(toSortedList)
-    p4(flatMap)
-    p7(filter)
-    p12(split_modalities)
-    p14(join)
-    p21(concat)
-    p17(filter)
-    p19(test_wf:run_wf:split_modalities_workflow:splitStub)
-    p22(flatMap)
-    p23(filter)
-    p26(toSortedList)
-    p28(flatMap)
-    p30(toSortedList)
-    p32(Output)
-    p38(normalize_total)
-    p40(join)
-    p48(log1p)
-    p50(join)
-    p58(delete_layer)
-    p60(join)
-    p68(filter_with_hvg)
-    p70(join)
-    p78(rna_calculate_qc_metrics)
-    p80(join)
-    p121(concat)
-    p86(filter)
-    p89(toSortedList)
-    p91(flatMap)
-    p93(toSortedList)
-    p95(Output)
-    p101(clr)
-    p103(join)
-    p111(prot_calculate_qc_metrics)
-    p113(join)
-    p119(filter)
-    p122(groupTuple)
-    p128(merge)
-    p130(join)
-    p133(filter)
-    p137(toSortedList)
-    p139(flatMap)
-    p146(pca)
-    p148(join)
-    p156(find_neighbors)
-    p158(join)
-    p166(umap)
-    p168(join)
-    p173(concat)
-    p172(filter)
-    p174(filter)
-    p178(toSortedList)
-    p180(flatMap)
-    p187(pca)
-    p189(join)
-    p197(find_neighbors)
-    p199(join)
-    p207(test_wf:run_wf:integration_setup_workflow:initialize_integration_prot:umap:umap_process1)
-    p209(join)
-    p214(concat)
-    p213(filter)
-    p220(publish)
-    p222(join)
-    p227(toSortedList)
-    p229(Output)
-    p21-->p22
-    p22-->p23
-    p22-->p86
-    p22-->p119
-    p121-->p122
-    p172-->p173
-    p173-->p174
-    p173-->p213
-    p213-->p214
-    p0-->p2
-    p2-->p4
-    p4-->p7
-    p4-->p17
-    p7-->p14
-    p7-->p12
-    p12-->p14
-    p14-->p21
-    p17-->p19
-    p19-->p21
-    p23-->p26
-    p26-->p28
-    p28-->p30
-    p30-->p32
-    p28-->p40
-    p28-->p38
-    p38-->p40
-    p40-->p50
-    p40-->p48
-    p48-->p50
-    p50-->p60
-    p50-->p58
-    p58-->p60
-    p60-->p70
-    p60-->p68
-    p68-->p70
-    p70-->p80
-    p70-->p78
-    p78-->p80
-    p80-->p121
-    p86-->p89
-    p89-->p91
-    p91-->p93
-    p93-->p95
-    p91-->p103
-    p91-->p101
-    p101-->p103
-    p103-->p113
-    p103-->p111
-    p111-->p113
-    p113-->p121
-    p119-->p121
-    p122-->p130
-    p122-->p128
-    p128-->p130
-    p130-->p133
-    p130-->p172
-    p133-->p137
-    p137-->p139
-    p139-->p148
-    p139-->p146
-    p146-->p148
-    p148-->p158
-    p148-->p156
-    p156-->p158
-    p158-->p168
-    p158-->p166
-    p166-->p168
-    p168-->p173
-    p174-->p178
-    p178-->p180
-    p180-->p189
-    p180-->p187
-    p187-->p189
-    p189-->p199
-    p189-->p197
-    p197-->p199
-    p199-->p209
-    p199-->p207
-    p207-->p209
-    p209-->p214
-    p214-->p222
-    p214-->p220
-    p220-->p222
-    p222-->p227
-    p227-->p229
+    v0(Input)
+    v2(toSortedList)
+    v4(flatMap)
+    v7(filter)
+    v12(split_modalities)
+    v14(join)
+    v21(concat)
+    v17(filter)
+    v19(test_wf:run_wf:split_modalities_workflow:splitStub)
+    v22(flatMap)
+    v23(filter)
+    v26(toSortedList)
+    v28(flatMap)
+    v30(toSortedList)
+    v32(Output)
+    v38(normalize_total)
+    v40(join)
+    v48(log1p)
+    v50(join)
+    v58(delete_layer)
+    v60(join)
+    v68(filter_with_hvg)
+    v70(join)
+    v78(rna_calculate_qc_metrics)
+    v80(join)
+    v121(concat)
+    v86(filter)
+    v89(toSortedList)
+    v91(flatMap)
+    v93(toSortedList)
+    v95(Output)
+    v101(clr)
+    v103(join)
+    v111(prot_calculate_qc_metrics)
+    v113(join)
+    v119(filter)
+    v122(groupTuple)
+    v128(merge)
+    v130(join)
+    v133(filter)
+    v137(toSortedList)
+    v139(flatMap)
+    v146(pca)
+    v148(join)
+    v156(find_neighbors)
+    v158(join)
+    v166(umap)
+    v168(join)
+    v173(concat)
+    v172(filter)
+    v174(filter)
+    v178(toSortedList)
+    v180(flatMap)
+    v187(pca)
+    v189(join)
+    v197(find_neighbors)
+    v199(join)
+    v207(test_wf:run_wf:integration_setup_workflow:initialize_integration_prot:umap:umap_process1)
+    v209(join)
+    v214(concat)
+    v213(filter)
+    v220(publish)
+    v222(join)
+    v227(toSortedList)
+    v229(Output)
+    v21-->v22
+    v22-->v23
+    v22-->v86
+    v22-->v119
+    v121-->v122
+    v172-->v173
+    v173-->v174
+    v173-->v213
+    v213-->v214
+    v0-->v2
+    v2-->v4
+    v4-->v7
+    v4-->v17
+    v7-->v14
+    v7-->v12
+    v12-->v14
+    v14-->v21
+    v17-->v19
+    v19-->v21
+    v23-->v26
+    v26-->v28
+    v28-->v30
+    v30-->v32
+    v28-->v40
+    v28-->v38
+    v38-->v40
+    v40-->v50
+    v40-->v48
+    v48-->v50
+    v50-->v60
+    v50-->v58
+    v58-->v60
+    v60-->v70
+    v60-->v68
+    v68-->v70
+    v70-->v80
+    v70-->v78
+    v78-->v80
+    v80-->v121
+    v86-->v89
+    v89-->v91
+    v91-->v93
+    v93-->v95
+    v91-->v103
+    v91-->v101
+    v101-->v103
+    v103-->v113
+    v103-->v111
+    v111-->v113
+    v113-->v121
+    v119-->v121
+    v122-->v130
+    v122-->v128
+    v128-->v130
+    v130-->v133
+    v130-->v172
+    v133-->v137
+    v137-->v139
+    v139-->v148
+    v139-->v146
+    v146-->v148
+    v148-->v158
+    v148-->v156
+    v156-->v158
+    v158-->v168
+    v158-->v166
+    v166-->v168
+    v168-->v173
+    v174-->v178
+    v178-->v180
+    v180-->v189
+    v180-->v187
+    v187-->v189
+    v189-->v199
+    v189-->v197
+    v197-->v199
+    v199-->v209
+    v199-->v207
+    v207-->v209
+    v209-->v214
+    v214-->v222
+    v214-->v220
+    v220-->v222
+    v222-->v227
+    v227-->v229
 
 ```
diff --git a/components/workflows/multiomics/prot_multisample.qmd b/components/workflows/multiomics/prot_multisample.qmd
index 83fbe390..4bfd1416 100644
--- a/components/workflows/multiomics/prot_multisample.qmd
+++ b/components/workflows/multiomics/prot_multisample.qmd
@@ -14,7 +14,7 @@ ID: `prot_multisample`
 Namespace: `multiomics`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./workflows/multiomics/prot_multisample){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./workflows/multiomics/prot_multisample){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script ./workflows/multiomics/prot_multisample/main.nf \
   --help
 ```
@@ -58,7 +58,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script ./workflows/multiomics/prot_multisample/main.nf \
   -params-file params.yaml
@@ -101,26 +101,26 @@ Replace `-profile docker` with `-profile podman` or `-profile singularity` depen
 ```{mermaid}
 %%| column: screen-inset-shaded
 flowchart LR
-    p0(Input)
-    p3(toSortedList)
-    p5(flatMap)
-    p7(toSortedList)
-    p9(Output)
-    p15(clr)
-    p17(join)
-    p25(prot_calculate_qc_metrics)
-    p27(join)
-    p34(Output)
-    p0-->p3
-    p3-->p5
-    p5-->p7
-    p7-->p9
-    p5-->p17
-    p5-->p15
-    p15-->p17
-    p17-->p27
-    p17-->p25
-    p25-->p27
-    p27-->p34
+    v0(Input)
+    v3(toSortedList)
+    v5(flatMap)
+    v7(toSortedList)
+    v9(Output)
+    v15(clr)
+    v17(join)
+    v25(prot_calculate_qc_metrics)
+    v27(join)
+    v34(Output)
+    v0-->v3
+    v3-->v5
+    v5-->v7
+    v7-->v9
+    v5-->v17
+    v5-->v15
+    v15-->v17
+    v17-->v27
+    v17-->v25
+    v25-->v27
+    v27-->v34
 
 ```
diff --git a/components/workflows/multiomics/prot_singlesample.qmd b/components/workflows/multiomics/prot_singlesample.qmd
index fa624921..c3cc4eb4 100644
--- a/components/workflows/multiomics/prot_singlesample.qmd
+++ b/components/workflows/multiomics/prot_singlesample.qmd
@@ -14,7 +14,7 @@ ID: `prot_singlesample`
 Namespace: `multiomics`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./workflows/multiomics/prot_singlesample){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./workflows/multiomics/prot_singlesample){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script ./workflows/multiomics/prot_singlesample/main.nf \
   --help
 ```
@@ -64,7 +64,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script ./workflows/multiomics/prot_singlesample/main.nf \
   -params-file params.yaml
@@ -117,24 +117,24 @@ Replace `-profile docker` with `-profile podman` or `-profile singularity` depen
 ```{mermaid}
 %%| column: screen-inset-shaded
 flowchart LR
-    p0(Input)
-    p3(toSortedList)
-    p5(flatMap)
-    p12(filter_with_counts)
-    p14(join)
-    p22(do_filter)
-    p24(join)
-    p30(toSortedList)
-    p32(Output)
-    p0-->p3
-    p3-->p5
-    p5-->p14
-    p5-->p12
-    p12-->p14
-    p14-->p24
-    p14-->p22
-    p22-->p24
-    p24-->p30
-    p30-->p32
+    v0(Input)
+    v3(toSortedList)
+    v5(flatMap)
+    v12(filter_with_counts)
+    v14(join)
+    v22(do_filter)
+    v24(join)
+    v30(toSortedList)
+    v32(Output)
+    v0-->v3
+    v3-->v5
+    v5-->v14
+    v5-->v12
+    v12-->v14
+    v14-->v24
+    v14-->v22
+    v22-->v24
+    v24-->v30
+    v30-->v32
 
 ```
diff --git a/components/workflows/multiomics/rna_multisample.qmd b/components/workflows/multiomics/rna_multisample.qmd
index 9497d16a..a8a5f0a5 100644
--- a/components/workflows/multiomics/rna_multisample.qmd
+++ b/components/workflows/multiomics/rna_multisample.qmd
@@ -14,7 +14,7 @@ ID: `rna_multisample`
 Namespace: `multiomics`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./workflows/multiomics/rna_multisample){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./workflows/multiomics/rna_multisample){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script ./workflows/multiomics/rna_multisample/main.nf \
   --help
 ```
@@ -65,7 +65,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script ./workflows/multiomics/rna_multisample/main.nf \
   -params-file params.yaml
@@ -123,41 +123,41 @@ Replace `-profile docker` with `-profile podman` or `-profile singularity` depen
 ```{mermaid}
 %%| column: screen-inset-shaded
 flowchart LR
-    p0(Input)
-    p3(toSortedList)
-    p5(flatMap)
-    p7(toSortedList)
-    p9(Output)
-    p15(normalize_total)
-    p17(join)
-    p25(log1p)
-    p27(join)
-    p35(delete_layer)
-    p37(join)
-    p45(filter_with_hvg)
-    p47(join)
-    p55(rna_calculate_qc_metrics)
-    p57(join)
-    p64(Output)
-    p0-->p3
-    p3-->p5
-    p5-->p7
-    p7-->p9
-    p5-->p17
-    p5-->p15
-    p15-->p17
-    p17-->p27
-    p17-->p25
-    p25-->p27
-    p27-->p37
-    p27-->p35
-    p35-->p37
-    p37-->p47
-    p37-->p45
-    p45-->p47
-    p47-->p57
-    p47-->p55
-    p55-->p57
-    p57-->p64
+    v0(Input)
+    v3(toSortedList)
+    v5(flatMap)
+    v7(toSortedList)
+    v9(Output)
+    v15(normalize_total)
+    v17(join)
+    v25(log1p)
+    v27(join)
+    v35(delete_layer)
+    v37(join)
+    v45(filter_with_hvg)
+    v47(join)
+    v55(rna_calculate_qc_metrics)
+    v57(join)
+    v64(Output)
+    v0-->v3
+    v3-->v5
+    v5-->v7
+    v7-->v9
+    v5-->v17
+    v5-->v15
+    v15-->v17
+    v17-->v27
+    v17-->v25
+    v25-->v27
+    v27-->v37
+    v27-->v35
+    v35-->v37
+    v37-->v47
+    v37-->v45
+    v45-->v47
+    v47-->v57
+    v47-->v55
+    v55-->v57
+    v57-->v64
 
 ```
diff --git a/components/workflows/multiomics/rna_singlesample.qmd b/components/workflows/multiomics/rna_singlesample.qmd
index 79cf3dbf..b68de404 100644
--- a/components/workflows/multiomics/rna_singlesample.qmd
+++ b/components/workflows/multiomics/rna_singlesample.qmd
@@ -14,7 +14,7 @@ ID: `rna_singlesample`
 Namespace: `multiomics`
 
 ### Links
-[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.1/./workflows/multiomics/rna_singlesample){.btn-action .btn-sm .btn-info .btn role="button"}
+[Source](https://github.com/openpipelines-bio/openpipeline/blob/0.10.2/./workflows/multiomics/rna_singlesample){.btn-action .btn-sm .btn-info .btn role="button"}
 
 :::
 
@@ -30,7 +30,7 @@ You can use `--help` as a parameter to get an overview of the possible parameter
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -main-script ./workflows/multiomics/rna_singlesample/main.nf \
   --help
 ```
@@ -69,7 +69,7 @@ publish_dir: # please fill in - example: "output/"
 
 ```bash
 nextflow run openpipelines-bio/openpipeline \
-  -r 0.10.1 -latest \
+  -r 0.10.2 -latest \
   -profile docker \
   -main-script ./workflows/multiomics/rna_singlesample/main.nf \
   -params-file params.yaml
@@ -131,27 +131,27 @@ Replace `-profile docker` with `-profile podman` or `-profile singularity` depen
 ```{mermaid}
 %%| column: screen-inset-shaded
 flowchart LR
-    p0(Input)
-    p3(toSortedList)
-    p5(flatMap)
-    p12(filter_with_counts)
-    p14(join)
-    p22(do_filter)
-    p24(join)
-    p32(filter_with_scrublet)
-    p34(join)
-    p42(Output)
-    p0-->p3
-    p3-->p5
-    p5-->p14
-    p5-->p12
-    p12-->p14
-    p14-->p24
-    p14-->p22
-    p22-->p24
-    p24-->p34
-    p24-->p32
-    p32-->p34
-    p34-->p42
+    v0(Input)
+    v3(toSortedList)
+    v5(flatMap)
+    v12(filter_with_counts)
+    v14(join)
+    v22(do_filter)
+    v24(join)
+    v32(filter_with_scrublet)
+    v34(join)
+    v42(Output)
+    v0-->v3
+    v3-->v5
+    v5-->v14
+    v5-->v12
+    v12-->v14
+    v14-->v24
+    v14-->v22
+    v22-->v24
+    v24-->v34
+    v24-->v32
+    v32-->v34
+    v34-->v42
 
 ```