HDF5 import issue in headless mode - no image opened

[Alxcho]

Hi,

I have a IJ macro that opens HDF5 images from Ilastik for processing and runs fine when started from IJ in batch mode with the standard run("Import HDF5", "select=[" + inputFilePath + "] datasetname=" + datasetpath + "axisorder=" + yxc). Images are processed, everything is fine.

But this doesn't seem to work when the macro is ran in headless mode / from cmd line. The import seems to complete (message reads [INFO] Import dataset finished in xxx seconds), but the image is nowhere to be found, getTitle(), or any similar command fails with the same message: Macro Error: There are no images open.

Any workaround / anything I am missing (any macro extension to call for Ilastik plugin?) or run("Import HDF5) doesn't work in headless mode /from cmd line (yet?)